Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00229 ATGGTGATGTGCTTCAAGCTCATAATGTGGAATGTGGTACTGCTTCTTGTTTGTTCTCTCATTGGTTCTGCTAAGGCCTCAGTGTCCTATGACTCTAAGGCTATCACCATCAATGGTCAGAGAAGGATCCTCATTTCTGGATCCATCCATTACCCAAGGAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCCAAGGAGGGAGGGTTGGATGTGATTCAGACTTATGTTTTCTGGAATGGGCACGAGCCTTCACCTGGCAAGTATTATTTTGAGGCGAACTATGATCTTGTGAAGTTCGTAAAGCTGGTGCAGCAAGCGGGCCTTTATGTTCATCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCAGGAATCAGCTTCAGAACAGACAATGAACCTTTTAAGTATCAAATGCAAAAATTTACCACGAAGATTGTTGATTTGATGAAAGCGGAGAGGTTATATGAATCTCAGGGAGGTCCAATAATTATGTCTCAGATTGAAAATGAATATGGACCAATAGAGTATGAAATTGGTGCTGCCGGTAAATCTTATACTAAGTGGGCAGCAGATATGGCTATGGGACTCGGTACCGGGGTTCCATGGGTCATGTGCAAGCAAGATGACACTCCTGATCCTCTTATTAACACTTGCAATGGCTTCTACTGTGATTATTTCTCTCCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACAGAGTTTGGAGGTCCGGTTCCTCATCGACCTGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGAGGATCATTTGTAAACTATTACATGTATCACGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCAACAAGCTATGATTATGATGCACCACTTGATGAGTATGGATTGCCCAGACAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTGTGTGAGCCAGCCTTAGTATCGGGAGATCCTACTGTAACAAAGATTGGAAACTATCAAGAGGCTCATGTGTTTAAATCAAAGTCGGGAGCTTGTGCTGCATTCCTTGCAAACTATAACCCAAAATCTTATGCAACGGTGGCATTTGGAAGTATGCATTACAACTTACCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGTGCCCAGATGAAGATGACTGGTGTTCCTATTCATGGCGGACTCTCTTGGCTATCATTCAATGAAGAAACGACTACTACTGAAGATAGTTCCTTCACCATGACTGGCCTGTTAGAGCAGCTAAATACAACAAGAGATTTATCTGACTACTTGTGGTACTCTACAGATGTTGTGCTTGATCCCGAAGAAGAATTTCTGAGAAACGGAAATGATCCTGTTCTTACTGTGTTTTCTGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAACTATCAGGAACTTCATATGGAAGCTTAGAATTCCCTAAACTAACATTTAGTGAAGGAGTGAAGCTCAGAGCTGGTGTTAACAAGATCTCTCTTCTAAGTGTTGCAGTTGGACTCCCGAATGTTGGTCCACATTTTGAAACATGGAATGCTGGTGTTCTTGGCCCAATTTCATTAAGTGGTCTCAACGAAGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACCTTGAGTCTTCACTCTCTTAGTGGAAGTTCCTCGGTGGAATGGATTCAGGGATCTTTAGTTTCTAGAAGACAGCCTTTGACTTGGTACAAAACAACTTTCGACGCCCCAGCAGGGACTGCCCCATTGGCTTTAGACATGGACAGCATGGGTAAAGGTCAAGTGTGGTTAAATGGACAGAATCTTGGCCGCTACTGGCCTGCTTATAAAGCTTCCGGTACCTGTGATTACTGTGACTATGCTGGAACTTATAATGAGAATAAATGCAGAAGTAACTGTGGCGAGGCATCTCAAAGATGGTATCATGTTCCACAGTCATGGCTAAAGCCTACAGGAAATTTATTGGTTGTGTTTGAAGAGCTAGGTGGAGATCCCAATGGAATCTTTTTGGTTAGAAGGGATATAGACAGTGTATGTGCTGATATTTATGAGTGGCAGCCAAACCTTGTAAGCTATCAGATACAAGTTTCTGGCAAACCACCTGTGAGGCCGAAAGTTCATTTATCATGTAGCCCTGGACAGAAAATCTCATCAATCAAATTTGCCAGCTTTGGTACTCCAGTAGGTTCTTGTGGAAACTTCCATGAAGGAAGCTGTCACGCTCATAAGTCTTATGATGCCTTTGAAAGGAATTGTGTAGGACAAAACTGGTGCACAGTAACGGTGTCACCTGAAAATTTTGGAGGAGATCCATGTCCAAATATCATGAAGAAACTCTCGGTGGAAGCTATTTGTACCTGA 2520 0.4306 MVMCFKLIMWNVVLLLVCSLIGSAKASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEANYDLVKFVKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKYQMQKFTTKIVDLMKAERLYESQGGPIIMSQIENEYGPIEYEIGAAGKSYTKWAADMAMGLGTGVPWVMCKQDDTPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDLAFSVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPRQPKWGHLKDLHRAIKLCEPALVSGDPTVTKIGNYQEAHVFKSKSGACAAFLANYNPKSYATVAFGSMHYNLPPWSISILPDCKHTVYNTARVGSQSAQMKMTGVPIHGGLSWLSFNEETTTTEDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVLDPEEEFLRNGNDPVLTVFSAGHALHVFINGQLSGTSYGSLEFPKLTFSEGVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPISLSGLNEGRRDLSWQKWSYKVGLKGETLSLHSLSGSSSVEWIQGSLVSRRQPLTWYKTTFDAPAGTAPLALDMDSMGKGQVWLNGQNLGRYWPAYKASGTCDYCDYAGTYNENKCRSNCGEASQRWYHVPQSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYQIQVSGKPPVRPKVHLSCSPGQKISSIKFASFGTPVGSCGNFHEGSCHAHKSYDAFERNCVGQNWCTVTVSPENFGGDPCPNIMKKLSVEAICT* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00229 839 SUPERFAMILY Galactose-binding domain-like 582 745 IPR008979 -
Lapu5g00229 839 ProSiteProfiles SUEL-type lectin domain profile. 753 839 IPR000922 GO:0030246
Lapu5g00229 839 FunFam Beta-galactosidase 292 420 - -
Lapu5g00229 839 Gene3D - 292 418 - -
Lapu5g00229 839 FunFam Beta-galactosidase 591 732 - -
Lapu5g00229 839 SUPERFAMILY (Trans)glycosidases 28 344 IPR017853 -
Lapu5g00229 839 Pfam Galactose binding lectin domain 761 838 IPR000922 GO:0030246
Lapu5g00229 839 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Lapu5g00229 839 FunFam Beta-galactosidase 446 583 - -
Lapu5g00229 839 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Lapu5g00229 839 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Lapu5g00229 839 Gene3D Glycosidases 22 291 - -
Lapu5g00229 839 PANTHER BETA-GALACTOSIDASE RELATED 18 742 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 FunFam Beta-galactosidase 749 839 - -
Lapu5g00229 839 Gene3D - 756 839 IPR043159 -
Lapu5g00229 839 CDD Gal_Rha_Lectin_BGal 756 838 - -
Lapu5g00229 839 SUPERFAMILY Galactose-binding domain-like 402 573 IPR008979 -
Lapu5g00229 839 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Lapu5g00229 839 Gene3D - 598 732 - -
Lapu5g00229 839 FunFam Beta-galactosidase 23 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00229 Lapu-Chr5 1886735 1893479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00229 13 839 Glycoside Hydrolase AT3G13750 80.217 0.0 1419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00229 - - gmx:100811187 1697.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00229 5 1886735 1893479 Lapu5g00229 5 1886735 1893479 ECH
Lapu5g00229 5 1886735 1893479 Lapu10g00475 10 7116304 7122980 PCT