Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01036 ATGTTGAGGCTTGCAGCTAAGAGACTCTCTTCTCTCTCCTCTCCTCCGTGCCGACCCTACCATGCTGCTTCCGCTTTCCTCTCCTCAAACGTCGTCGTTCATGACCGCAGATCCGCGCCTTCCTCTCACCTCATCAATCTCCTTCTTCCTTTCAGAGGTTTTTCTACTGAATCACTGATCCACACACACAAAAACAGCATTATTCCTGAGATTCCAGCAACTATTACTGCTATTAAGAACCCTACTTCTACGATTGTCTATGATGAGCACAACCATGAAAGGTTTCCCCCAGGTGACCCTAGCAAGAGGGCATTTGCTTATTTCGTCCTTACAGGTGGTAGGTTTGCTTATGCTTCTCTGGTTCGTCTCCTAATTCTCAAGTTTGTGCTTAGCATGTCTGCTAGTAAGGATGTTCTTGCTCTGGCTTCACTTGAGGTTGATCTCTCCAGCATTGAGCCTGGCACTACTGTGACCGTTAAGTGGCGTGGAAAGCCGGTGTTCATCAGGCGCCGAACTGAGGACGATATCAAGCTGGCAAACAATGTTGATGTTCTATCTCTTCGTGATCCCCAACAGGATGCAGATAGAGTGAAGGACCCAGAATGGCTAATTGTTATTGGAGTTTGCACGCATTTGGGCTGCATTCCATTGCCAAATGCTGGTGATTTTGGTGGGTGGTTTTGCCCTTGCCATGGATCACATTATGATATTTCTGGCAGAATTAGGAAGGGACCAGCACCATACAATCTGGAGGTTCCTACCTATTCCTTCTTGGATGAGAACAAGTTATTGATTGGTTGA 801 0.4682 MLRLAAKRLSSLSSPPCRPYHAASAFLSSNVVVHDRRSAPSSHLINLLLPFRGFSTESLIHTHKNSIIPEIPATITAIKNPTSTIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFAYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANNVDVLSLRDPQQDADRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLDENKLLIG* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01036 266 CDD Rieske_cytochrome_bc1 143 266 - -
Lapu4g01036 266 Pfam Rieske [2Fe-2S] domain 149 252 IPR017941 GO:0051537
Lapu4g01036 266 SUPERFAMILY ISP transmembrane anchor 83 139 - -
Lapu4g01036 266 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 121 266 IPR006317 GO:0008121
Lapu4g01036 266 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 136 266 - -
Lapu4g01036 266 Gene3D - 135 266 IPR036922 GO:0051537
Lapu4g01036 266 Pfam Ubiquinol cytochrome reductase transmembrane region 78 137 IPR004192 GO:0008121
Lapu4g01036 266 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 74 266 IPR014349 GO:0051537
Lapu4g01036 266 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 168 264 IPR017941 GO:0051537
Lapu4g01036 266 PRINTS Rieske 2Fe-2S subunit signature 204 215 IPR005805 GO:0016020|GO:0051537
Lapu4g01036 266 PRINTS Rieske 2Fe-2S subunit signature 238 250 IPR005805 GO:0016020|GO:0051537
Lapu4g01036 266 PRINTS Rieske 2Fe-2S subunit signature 226 238 IPR005805 GO:0016020|GO:0051537
Lapu4g01036 266 SUPERFAMILY ISP domain 140 263 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01036 Lapu-Chr4 26393879 26395745 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01036 K00411 - gmx:100806917 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00499 1 16404805 16407632 Lapu4g01036 4 26393879 26395745 PCT