Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00762 ATGGCTCAGGTCGCGGTCTCACGATCCATTCAAAGCACACTTTTGTGCCCCTCTTCTGGATCTGCACGTGACAGGGCCCAAAACCTGCTAAAGCCTCCATCTTTTGCTTCCATGGTGTTACCTTCCCAATGGAACAATAACAAACGCTCCCGACTCGGCCTAAAAAGCTTTCAGATCAGTGCAAGGAAATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCAGAGGATGATCCGAAGATTGAGCAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGGGATAATTCGGTTGGGATGTGGTCGAAGCCCACGTTTAGGCGCAAGACAAAGATCGTGTGTACCATTGGACCTTCTACCGATACGAAGGAAATGATTTGGAAGCTAGCTGAGGCTGGGATGAACGTTGCTCGGTTGAATATGTCTCATGGGGACCATGCTTCTCATCAGAAAGTCATTGACTTGGTCAAGGAATACAATGCTCAAAACGAGGATAATGTGATTGCAATCATGCTTGACACAAAGGGTCCTGAAGTTAGGAGTGGGGATTTGCCACAACCTATTATGTTAATGCCTGGGCAGGAGTTCACTTTTACTATCCAAAGAGGTGTCGGAACTGCAGATTGTGTTAGTGTTAATTACGATGATTTTGTCAATGATGTGGAAGTGGGGGATATGCTTCTTGTTGACGGTGGTATGATGTCTATGGTGGTCAAGTCTAAGACAGAGGATTCTGTGAAATGTGAAGTTATTGATGGAGGAGAGCTCAAGTCTAGGCGACATTTGAATGTTAGAGGAAAAAGTGCTACACTGCCTTCAATCACTGAGAAGGATTGGGATGATATCAAGTTTGGAGTTGATAACAAAGTTGACTTCTATGCTGTTTCCTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGAGCAGTGGTGTTGATATACATGTCATTGTAAAGATTGAAAGTGCAGACTCTATACCAAATTTGCACTCAATTATCACTGCATCTGATGGGGCCATGGTTGCCAGAGGAGATCTTGGTGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGGAAGAGATAATCAACTTGTGTCGTAGCATGGGAAAGGCTGTTATTGTGGCAACAAATATGCTAGAAAGCATGATTGTTCACCCAACTCCAACCAGAGCAGAGGTCTCAGATATAGCAATTGCTGTTCGAGAAGGTTCTGACGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAAGTTCCCATTGAAAGCCGTGAAAGTAATGCATACCGTAGCATTGCGAACAGAAGCCACCATACCGGGTGGTCAAATGCCACCTGACATTGGTCCAGTGTTCAAGAACCACATGAGTGAGATGTTTGCTTACCATGCAACAATGATGTCTAACACCCTTGGAACCTCAACTGTTGTCTTCACTAGAACGGGTTTCATGGCTATCTTATTGAGCCACTATCGTCCTTCTGGCTCCATATTTGCTTTTACAGATGAGAAGAGGGTGCAGCAGAGGCTTGCTTTATATCAAGGAGTCTGTCCCATATACATGGAATTCTGTGACGATTCTGAAGCAACCTTCAGAAGAGCTTTGGACCTTCTGCAGAAGCAAGGAATGGTGAAGGAAGGAGAGGAAGTAGCACTTGTACAAAGTGGTAGGCAACCCATATGGAGGTTCCAATCCACGCACAATATCCAGGTCAGGAAAGTGTAA 1734 0.4481 MAQVAVSRSIQSTLLCPSSGSARDRAQNLLKPPSFASMVLPSQWNNNKRSRLGLKSFQISARKSAPSEVIPVSPEDDPKIEQHLQHLRGVQPFGDNSVGMWSKPTFRRKTKIVCTIGPSTDTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQNEDNVIAIMLDTKGPEVRSGDLPQPIMLMPGQEFTFTIQRGVGTADCVSVNYDDFVNDVEVGDMLLVDGGMMSMVVKSKTEDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAEVVHELKNYLKSSGVDIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEATIPGGQMPPDIGPVFKNHMSEMFAYHATMMSNTLGTSTVVFTRTGFMAILLSHYRPSGSIFAFTDEKRVQQRLALYQGVCPIYMEFCDDSEATFRRALDLLQKQGMVKEGEEVALVQSGRQPIWRFQSTHNIQVRKV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00762 577 Pfam Pyruvate kinase, barrel domain 108 443 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 FunFam Pyruvate kinase 439 558 - -
Lapu4g00762 577 PANTHER PYRUVATE KINASE 82 555 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 ProSitePatterns Pyruvate kinase active site signature. 318 330 IPR018209 GO:0004743|GO:0006096
Lapu4g00762 577 Pfam Pyruvate kinase, alpha/beta domain 465 557 IPR015795 -
Lapu4g00762 577 Gene3D - 178 271 IPR015806 GO:0004743|GO:0006096
Lapu4g00762 577 PRINTS Pyruvate kinase family signature 416 432 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 PRINTS Pyruvate kinase family signature 347 371 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 PRINTS Pyruvate kinase family signature 320 346 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 PRINTS Pyruvate kinase family signature 166 182 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 PRINTS Pyruvate kinase family signature 290 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 PRINTS Pyruvate kinase family signature 397 415 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 PRINTS Pyruvate kinase family signature 372 396 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 FunFam Pyruvate kinase 273 438 - -
Lapu4g00762 577 Gene3D - 451 577 IPR036918 -
Lapu4g00762 577 NCBIfam pyruvate kinase 108 576 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lapu4g00762 577 Gene3D - 110 435 IPR040442 -
Lapu4g00762 577 FunFam Pyruvate kinase 178 271 - -
Lapu4g00762 577 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 100 442 IPR015813 GO:0003824
Lapu4g00762 577 SUPERFAMILY PK C-terminal domain-like 426 577 IPR036918 -
Lapu4g00762 577 SUPERFAMILY PK beta-barrel domain-like 177 268 IPR011037 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00762 Lapu-Chr4 18414614 18422047 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00762 K00873 - gmx:100803036 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00762 4 18414614 18422047 Lapu4g00762 4 18414614 18422047 ECH
Lapu4g00762 4 18414614 18422047 Lapu7g01974 7 35988926 35995398 PCT