Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00623 ATGTGGTGGTTGGGAAGAAAAGGACCTTCTGGATTCTCAGCTTCTTCTACTGCTCAAGAAGTTACTCAGGGAATTGATGCCACTGACCTCACTGCCATTGTTACAGGGGCAACTAGCGGTATTGGTGTTGAAACTACACGCGTGCTTGCATTACGCGGTGTCCATGTTGTTATGGGGATCAGAAATAGGGCAGCTGGTGAGGAGATCAAGGAAACGATACTAAGAGATAACCCAACTGCAAAAATTGACATGATGGAGCTGGACCTTAGCTCACTGGAATCGGTTAGGAAATTTGCAAAACAATTCAATTCTTGTGGTCTTCCTCTGAATATACTTGTTAATAATGCAGGAATCATGGCAACACCATTCAAGCTTTCCAAAGACAATATAGAATTACAATTCGCAACAAACCATATAGGGTACTTCCTTGCAGGTCATTTTCTTTTGACAAACTTATTGCTTGAAACAATGAAACAGACTGCTATTGAACAAAGGAAGGAGGGAAGGATCGTGAATGTCTCATCAAGACGGCATAAATTATCATATCCTGACGGGATTAGATTTGACAAAATTAATGATGAATCGGGGTATAACAGTTTGTCTGCATATGGGCAGTCAAAGTTTGCCAATGTTTTGCATGCCAATGAGCTTGCTAGACGGCTTAAGTGA 669 0.4141 MWWLGRKGPSGFSASSTAQEVTQGIDATDLTAIVTGATSGIGVETTRVLALRGVHVVMGIRNRAAGEEIKETILRDNPTAKIDMMELDLSSLESVRKFAKQFNSCGLPLNILVNNAGIMATPFKLSKDNIELQFATNHIGYFLAGHFLLTNLLLETMKQTAIEQRKEGRIVNVSSRRHKLSYPDGIRFDKINDESGYNSLSAYGQSKFANVLHANELARRLK* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00623 222 PANTHER RETINOL DEHYDROGENASE 9 221 - -
Lapu4g00623 222 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 221 IPR036291 -
Lapu4g00623 222 Pfam short chain dehydrogenase 31 182 IPR002347 -
Lapu4g00623 222 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lapu4g00623 222 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Lapu4g00623 222 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Lapu4g00623 222 Gene3D - 19 222 - -
Lapu4g00623 222 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Lapu4g00623 222 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Lapu4g00623 222 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Lapu4g00623 222 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00623 Lapu-Chr4 7020785 7040497 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00623 32 183 Lipid Metabolism Gene Families AT1G67730 28.846 5.90e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00623 - - gmx:100775556 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00623 4 7020785 7040497 Lapu4g00623 4 7020785 7040497 ECH