Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00555 ATGGGGAATTCATTTGGGTGCTCGGCGTCCGGTGAGAGGTTGGTGTCGGCGGCGAGGGACGGCGATTTGGTCGAGGCGAAGATGCTTCTGGAATGCAACCCTTGTCTTGCAAAGTACTCAACTTTTGGGGGTCTCAATTCCCCTCTTCATTTTGCAGCTTCTAAAGGCCATAATGAGATTGTGGCATTGCTGCTTGAAAATGGAGCTGATGTGAATTCAAGAAATTATTGTGGGCAGGTGAACTTCGGTGTTGGAAGATTTTGGTTTGCTTTTATCCATGATTTGAAGACGGCATTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAAACTCTTCTGCTTTTCAGATGTAATGTTATGAAAGCAGATTATCTCAGTGGGAGGACAGCTCTACACTTTGCAGCCATCAATGGGCATGCAAGATGCATCAGACTTGTTGTTGCAGATTTTGTTCCAAGTGCCCCTTTTGAAGCTTTACATGCTCGCATAGATGCGGAAGGTGATGGATCAAATGTGAAAAGCAAACATGAACAAAGGTGCGTCCTTCGTTTTCATGATGTAATCAGTTCGTGCAGTGTGCTGTCCAAGTTTGTGAACAAAACGGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTGAAGCAAATGTGTCAGCTGTAACATTTCACTATGGAACATCAATGGATTTAATTGGTAATCTTTTGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGGCAAGAATTTCTTAAACTTTGATTTGATATTCTATTTGGTCTTTTCCTTTGAATATGTGACGATGCTTTTATTTTTTCAGATCCTCCTTGCACGAGGCGCCAGTCGGATGGCTTTGAATTGCAATGGATGGCTTCCACTTGATGTTGCTAGGATGTGGGGACGGCATTGGCTTGAACCATTTCTGGCACCCACTTCTGAAGCCACAATATCAACATTTCCTTCTTCAAATTATTTGTCCTTGCCTCTCATGAGTGTGCTCAACATTGCCAGAGAGTGTGGATTGCAATCAACTACAACCTCCTCTAGTGATGTTGACGTTTGTGCTGTCTGCCTGGAGAGGTCATGTTCAGTGGCTGCTGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCTTCTGAAACGTGTGGACCTCCTGGCTCTATCCCTTGTCCCCTTTGCAGACATGGAATTGTCTCTTTTGTCAAGTTACCTTGTTCCCAAGCAAAAGAAAACAAAATGCATGTCTCTCTCAGCCTGTGTACTCCATGCATGCTACACCCTCGTGACCTAGATCGCTCTTCGGTTTCTCATACCCCTGAGATTCGAAGGAACCGTGTGGCTTCAGTTCCATCAGAGATGCTATGCCCTGTCACTTGTACTCCATTTCCATCTGTAGCTATTCCTCTGTGTACTTGCAATGATGGTCCTTGTCCAACATTTGAACCCCGGGAAGCAGAAACACGAGGTGAATCGGTTCGCCAGTCGCAAGCATCCACGATGGATCAGGATAAAATGGAAGGTCCAAGGCTGGACAAAACAACATGTTCAGGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAGTGCAATTCAGAAATAAATGCTTGA 1716 0.4458 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQVNFGVGRFWFAFIHDLKTALMQACRYGHWEVVQTLLLFRCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFEALHARIDAEGDGSNVKSKHEQRCVLRFHDVISSCSVLSKFVNKTADAGITALHMAALNGYFDCVQLLLDLEANVSAVTFHYGTSMDLIGNLLGWKHSIALCCLWRQFKMLSGKNFLNFDLIFYLVFSFEYVTMLLFFQILLARGASRMALNCNGWLPLDVARMWGRHWLEPFLAPTSEATISTFPSSNYLSLPLMSVLNIARECGLQSTTTSSSDVDVCAVCLERSCSVAAEGCGHELCVRCALYLCSTSNVSSETCGPPGSIPCPLCRHGIVSFVKLPCSQAKENKMHVSLSLCTPCMLHPRDLDRSSVSHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPTFEPREAETRGESVRQSQASTMDQDKMEGPRLDKTTCSGMFWGRRSCSREHQCNSEINA* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00555 571 ProSiteProfiles Ankyrin repeat profile. 128 149 IPR002110 GO:0005515
Lapu4g00555 571 ProSiteProfiles Ankyrin repeat profile. 206 238 IPR002110 GO:0005515
Lapu4g00555 571 ProSiteProfiles Ankyrin repeat region circular profile. 128 149 - -
Lapu4g00555 571 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Lapu4g00555 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 451 IPR013083 -
Lapu4g00555 571 ProSitePatterns Zinc finger RING-type signature. 393 402 IPR017907 -
Lapu4g00555 571 MobiDBLite consensus disorder prediction 517 545 - -
Lapu4g00555 571 Gene3D - 4 167 IPR036770 -
Lapu4g00555 571 ProSiteProfiles Zinc finger RING-type profile. 378 428 IPR001841 -
Lapu4g00555 571 Pfam Ankyrin repeats (3 copies) 96 149 IPR002110 GO:0005515
Lapu4g00555 571 Pfam Ankyrin repeats (3 copies) 14 75 IPR002110 GO:0005515
Lapu4g00555 571 Pfam Ankyrin repeats (many copies) 201 246 IPR002110 GO:0005515
Lapu4g00555 571 PANTHER SI:CH211-189E2.2 42 238 IPR047162 -
Lapu4g00555 571 SMART ANK_2a 128 159 IPR002110 GO:0005515
Lapu4g00555 571 SMART ANK_2a 206 235 IPR002110 GO:0005515
Lapu4g00555 571 SMART ANK_2a 44 73 IPR002110 GO:0005515
Lapu4g00555 571 SMART ANK_2a 94 123 IPR002110 GO:0005515
Lapu4g00555 571 Gene3D - 193 339 IPR036770 -
Lapu4g00555 571 ProSiteProfiles Ankyrin repeat region circular profile. 206 235 - -
Lapu4g00555 571 SUPERFAMILY Ankyrin repeat 14 332 IPR036770 -
Lapu4g00555 571 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Lapu4g00555 571 SUPERFAMILY RING/U-box 377 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00555 Lapu-Chr4 5600623 5607486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00555 14 249 Miscellaneous Gene Families AT2G31820 28.000 9.72e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00555 K19044 - gmx:100812809 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00555 4 5600623 5607486 Lapu4g00555 4 5600623 5607486 ECH