Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00554 ATGCGAGTCTTCGCTTCTCGAACCTCCAACTTCTTCAAGTGCAATTTCGAGAATTTCCCATACAGTTTCAACTTCTTCAGAGAATTCGCGCAATCCACCGCAATACCCAAAAAGCAACTAAGGGTTCGTGACCATGGCTACGACAACTACATGGAAGTGGAGAAGAAAACGCGCAAGGTCCTCAAATTTCAGAGCATCATCCTCGCCGAGCCCACCCAATCGCTCCCAATCTCGCGCCTCGAAACCCTTGTGCGCCGCTTTGGCTTCACGCGCTACGAGGCTGGCGCGTTTATCCTCAAGTTCCCGCACGTCTTCGAAATCTTCGAACACCCCGTCCAGCGCATCCTCTTCTGCCGCCTCACCCGCAAGGCCATTCTCCAGATCCAGCAGGAACGCCAGGCGCTTGCGGAGCAAATCCCACGCGCCATCACGCGGCTTCGGAAGCTTCTCCTGATGTCTAATGAAGGCAGGCTCCGCCTCGAGCACGTGCGCATCGCACGCGCCGCCTTCGGGCTTCCCGACGACTTCGAACACTCGGTGGTTCTGAGGTACCCTCAGTTTTTCCGTTTGATTGATGCCAATGAAACTAGGATGAAGTACATTGAGGTTGTGGAGAGAGACCCTAGGTTAGGGATTTGTGCAATTGAGGAGGTTAGGGAGAGGGAGTATAGAGAGAGAGGTGGTGATGCCGAGGATGTTAGGTTTGCTTTTGTGATTGATTTTCCACCTGGTTTTAAGATTGGTAAGTATTTTAGGATCGCAATGTGGAAGTGGCAGAGGCTTCCTTATTGGTCCCCTTATGAGGATGTTTCTGGGTATGATTTGAGGTCCATTGAGGCTCAGAAGAGGATGGAGAAGAGGGCTGTTGCCACCATTCATGAGTTGTTGTCGTTGACTGTGGAGAAGAAGATTACATTGGAGCGGATCGCACATTTCCGGATGGCGATGAATCTGCCCAAGAGGTTGAAGGATTTCCTGCTCCAGCACCAAGGTATTTTCTATGTCTCCACCAGGGGGAATCAGGGGAAGCTTCACACTGTTTTCCTTAGGGAGGCGTATAGGAAAGGCGAGCTTATTGAGCCGAATGAGTTGTATTTGGCACGGAGGAAGCTGGCTGAGCTTGTGCTGTTGAGTCCTCGGAAAGCCAAGGTTGATAAGGAGTTGGTTGGGTACAGGAGAAGCAGGTTAGAGGACGAAATGGGGCAGGTAACGAGGACGTATGTGGAGGATGCTTGTGAAGACTTTAAGGAGGAAGATGGTGTGGGGCTGGATAAGGATGCAGAGGATGATTTGACATCAGATATAGGTTCTGATGTTGATTTGGGAGATGAGGATGATGATTTTGTGGATAGTGTACCATTACCAAGGACATCATAG 1377 0.5062 MRVFASRTSNFFKCNFENFPYSFNFFREFAQSTAIPKKQLRVRDHGYDNYMEVEKKTRKVLKFQSIILAEPTQSLPISRLETLVRRFGFTRYEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAILQIQQERQALAEQIPRAITRLRKLLLMSNEGRLRLEHVRIARAAFGLPDDFEHSVVLRYPQFFRLIDANETRMKYIEVVERDPRLGICAIEEVREREYRERGGDAEDVRFAFVIDFPPGFKIGKYFRIAMWKWQRLPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKRLKDFLLQHQGIFYVSTRGNQGKLHTVFLREAYRKGELIEPNELYLARRKLAELVLLSPRKAKVDKELVGYRRSRLEDEMGQVTRTYVEDACEDFKEEDGVGLDKDAEDDLTSDIGSDVDLGDEDDDFVDSVPLPRTS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00554 458 MobiDBLite consensus disorder prediction 433 448 - -
Lapu4g00554 458 MobiDBLite consensus disorder prediction 418 458 - -
Lapu4g00554 458 MobiDBLite consensus disorder prediction 418 432 - -
Lapu4g00554 458 Pfam Plant organelle RNA recognition domain 42 378 IPR021099 GO:0003723
Lapu4g00554 458 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 30 398 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00554 Lapu-Chr4 5590701 5594586 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00554 - - gmx:100782167 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00554 4 5590701 5594586 Lapu4g00554 4 5590701 5594586 ECH