Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00542 ATGGGGGCTGGTGCTTCCACAACTGTCACAGAATATGATGATGCTGGCACCTTCTCTTTGTCCTCACAGACTACCCTTGATGATGTCCCTGAGAACTGCATCTCTTCACTGATGATGAGTTTTGATCCACAAGAGATTTGCTCATTGGCCAGAGTGAACAAGGCCTTCCACAGAGCTTCTTCTGCAGACTTTGTGTGGGAATCAAAGTTGCCCTCAACCTATAAATTCCTCCTCAACAAAGTTCTTGGTGAACAAAATCTTTCTTCCATGACCAAGAAAGAGATCTATGCCAAACTATGCCGACCCAATTTCTTTGATGCTGGCACCAAAGAAGTTTGGTTGGACAGATGCAGTGCACAAGTTTTTTTGTTCATTTCTTCAAAAGCCTTCAAGATCACAGGAATAGATGATAGAAGATATTGGAATTATGTTCCAACTGAGGAATCCAGGTTTAAGAATGTTGCATATCTTCAACAAATGTGGTGGGTTGAAGTAATAGGGGAGCTAGAGTTTGAGTTTCCAAAGGGAAACTATAGTGTGTTTTTCAAGCTTCAATTGGGGAAGACCACAAAGAGATTGGGCCGAAGAGTGTGCAACCTTGATCAAGTTCATGGATGGGACATCAAGCCCGTTAGATTTCAACTATCTACATCTGACGGCCAGAGTTCACTCTCACAGTGCTATTTGCGTGGGCCAGGAGAATGGGCCCACTATCATGTTGGAGACTTTGCAATCGAGAAGCCCAATGGGCCAACAAACATCAAGTTTTCTTTGGCCCAAATTGATTGCACGCACACCAAAGGTGGCCTTTGTATAGATGGGGTAGTGATTTGCCCAAAGGAGCTTTCAGAAAGACTGAAACAATTTTAG 870 0.4345 MGAGASTTVTEYDDAGTFSLSSQTTLDDVPENCISSLMMSFDPQEICSLARVNKAFHRASSADFVWESKLPSTYKFLLNKVLGEQNLSSMTKKEIYAKLCRPNFFDAGTKEVWLDRCSAQVFLFISSKAFKITGIDDRRYWNYVPTEESRFKNVAYLQQMWWVEVIGELEFEFPKGNYSVFFKLQLGKTTKRLGRRVCNLDQVHGWDIKPVRFQLSTSDGQSSLSQCYLRGPGEWAHYHVGDFAIEKPNGPTNIKFSLAQIDCTHTKGGLCIDGVVICPKELSERLKQF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00542 289 PANTHER F-BOX PROTEIN PP2-A15 20 286 - -
Lapu4g00542 289 SUPERFAMILY F-box domain 19 96 IPR036047 GO:0005515
Lapu4g00542 289 CDD F-box_AtSKIP3-like 26 71 - -
Lapu4g00542 289 ProSiteProfiles F-box domain profile. 23 69 IPR001810 GO:0005515
Lapu4g00542 289 Pfam Phloem protein 2 123 279 IPR025886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00542 Lapu-Chr4 5454304 5457785 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00542 - - gmx:100816360 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00542 4 5454304 5457785 Lapu4g00542 4 5454304 5457785 ECH