Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00262 ATGGCGTCTCGGAGAGCGATCGGTTTCGTCGGCGTTGATGAGTTCAGCTTGGAGATGGCGCATTCCGCGATTCGCCATGGCTACGATGTGCGAGCTTTCGAGATAAATAATCCTGTCATTGAAGAAATCGTGAAGCTTGGAGGAGTTAGATGTTCAAGTCCTTCGGAAGCTGGGAGAGATGTAACAGCTGTAGTTATCCGAATATCTCACATAGATCAAACTAATGATCTTATTTTCGGAGATGAGGGTGCTTTGAAAGGACTAAAACCAGACACTGTTCTTATTCTCCGTTCGACCATATTACCATCATTTCTCCATAAACTGGAGGGGGATCTAGCAGAAATTCACGAGATTGATTATGTTGTTGATGCATATGTCTCTTATGGGAGATCCGATGCTTTGAACGGAAAACTCATTATTGCATCATCTGGAAGACTAGATGCCATTGCACGAGCACAACCTATTCTTTCTGCAATGTGTGAAAAGCTCTTCACTTTTGAGGGTGAAATTGGTGGTGGCAGCAAGGTTAAAATGGTGAACTTGATGCTGGAAGGCATTCATTTTATTAATGCAGTGGAGGCTCTCTCTCTTGGTGCCAAAATTGGAATTCATCCTTGGATAATCTATGATATAATTTCCAATGCTGCAGGAAATTCATGGGCGTTCAAGAATTATTTACCCCTTTTGTTGAAGGGAGAGCTTGATCATCAAATTTTGAACACTTTCGTTAAAGAGTTGGAAATCATTTTGAATACGTCCAAGTCACTTACTTTTCCACTTCCAATTTTGGCTGCTACTCATCTACAACTTATTCACGGGGTTTCACTTGTTGACAGTGGAGATGATGTTACAGTATTGACCAAGGTTTGGGAAAAGGTTTACGGGGTTAAAATTTCAGATGCTGCAAATGCTGATGCGTATAACCCAGAGCAACTGGCATCTGAATTTACTACTGATTCTAAGAGTGTGAGAAGGGTTGGTTTCATCGGCCTTGGAGCTATGGGATTTGGGATGGCAACTCATTTACTGAGTTCACAATTCTGCGTTGTTGGTTATGACGTGTATAAACCAACTCTGACACGATTTACAAATGCTGGTGGCCTGATTGGAAATTCTCCCGCTGAAGTGAGCAAAGATGTTGATGTGCTCATAATTATGGTCACGAATGAAGCACAAGCAGAAAATGTTTTATATGGAGAACATGGTGCAGTTTCAGCTCTTCCACATGGAGCATCTATCATTCTCTCTTCCACGGTTTCCCCTGCATACGTGAGTCAGCTGGAGCACAGATTGCACAATGAAGGTAAGAATTTGAAGTTGGTGGATGCCCCAGTTTCTGGTGGTGTTAAGAGGGCCTCATTGGGAACACTTACGATAATGGCTTCAGGAACTGATGATGCCCTTAAGAGTGCTGGTCAGGTCTTAGCAGCCTTGAGTGAGAAGCTTTATATTATCAAAGGTGGTTGCGGTTCCGGAAGTGGTATAAAGATGATTAACCAATTGCTTGCTGGAGTTCACATTGCCTCAGCTGCTGAGGCAATAGCATTTGCAGCTCGGTTGGGTTTGAATACAAGACTGTTGTTCGATTTTATTACAATTAGTGGGGGAACTTCCTGGATGTTTGAGAATCGTGGCCAACACATGATAGACAATGATTACACACCATGTTCAGCACTTGATATCTTTGTGAAGGACATGGGAATTGTTACTCGTGAATCGTCTACATGGAAAGTTCCACTTCAGCTATCAACTATTGCTCACCAACTATATCTGGCAGGTTCTGCTGCTGGTTGGGGACGGATTGATGATGCTGGTGTGGTCAAGGTTTATGAGATGCTAACTGGTGTAAGAGTTGAAGGAAAACTCCAGGCTCAAAGGAAAGATGCCATGTTACATTCTCTTCCACCAGAGTGGCCCCAAGATCATGTTCTTGATATACAAACACTAAAAGAAAGCAATTCAAAGATTTTAGTTGTATTAGACGATGATCCGACAGGAACACAAACTGTTCATGATATTGAGGTACTAACAGAATGGACCATTGAGTCGCTGATTGAGCAGTTTAGAAAAAGTCCAAAATGCTTTTTCATTTTGACAAACTCCAGGTCTCTGAGTTCTGACAAGGCCAGTGCACTGATAAAAGAGATTTGTAGAAATCTGGACATTGCAGCGAAATCAGTTGACAATATTGACTATTCCGTAGTTTTGAGGGGAGATTCAACTTTACGAGGTTGTTTTGTGCAGGAAGCAGATGCGGTTGTTTCAGTATTGGGTGAAATGGATGCATGGATAATTTGTCCCTTTTTCCTTCAAGGAGGTCGTTACACTATTGCAGACACACACTACGTTGATGATTCTGATACGCTTGTTCCTGCAGGGGACACAGAGTTTGCCAAAGATGCTTCCTTTGGCTACAAATCTTCAAACCTGCGTGATTGGGTAGAGGAGAAGGCAAATGGCCGAATACTTGCAAGTAGTGTTGCATCTGTTTCTATCGAACTTTTGAGGAAAGGAGGTCCAAATGCAGTCTGTCAGCATCTATGCAGTTTGCAGAAGGGGACAATATGCATAGTTAATGCAGCTAGCGAACGAGACATGACTGTATTTGCACTTGGAATGATCAAGGCAAAACTTCCTTCTTCTCTTTCATGCCTTTTGGCAGAATTGACAGGAAAACGGTTCTTGTGTCGCACTGCTGCTAGTTTTGTCTCTGCCCTTATGGGAATCGTCTCTAAGCCTCCAATATTGCCAAGTGATCTAGGAATAGCTAGAGAAAGGAATGGTGGTCTGATAGTTGTGGGATCCTATGTTCCAAAAACAACAAAGCAGGTTGAAGAACTCAAACTACAGTGCAGTCAGTTCTTAAAAAGCATTGAGGTATCAGTTGAAAAACTTGCAATGAGCCCTATTGAGGAGAGGGAGGAGGAAATCAGTAGAACAGCTGAATTAGCAGATGTATATCTTAAAGCTCATAAAGACACTCTAATAATGACGAGCCGAAATCTCATAACTGGAAGAACTGCCGCTGAGAGTTTGGACATTAACTTTAAAGTGAGTTCCGCTTTGGTGGAAATAGTGAAAAGAGTAACTACAAAACCTCGCTATATAATTGCAAAGAATATGAAAGGTGGTATTACGTCTTCAGACCTCGCTACAAAAGCCCTTGGTGCAAGATGTGCGAAGATAGTTGGACAAGCACTTGCTGGTATTCCCTTGTGGCAATTAGGCCCTGAAAGTAGACATCCTGGAATTCCTTACATTGTCTTCCCTGGTAATGTTGGTAACAGCACAGCCTTGGCAGAAGTTGTGAAGTCCTGGACTTACCCAATCAGATTTACATCAACGAAAGAAATTCTTAATAATGCAGAAAAAGGTGGTTATGCTGTTGGAGCATTTAATGTCTACAATTTGGAAGGAGCTGAGGCTGTTGTTTCTGCAGCAGAGGAAGAACAAAGTCCTGCTATATTACAGATCCATCCAGGGGCCTTCAAGCAAGGAGGAATTCCCTTGGTGGCTTGTTGCATTTCTGCTGCAGAGCAAGCCAGTGTTCCCATTACTGTTCACTTTGATCATGGAACTTTAAAGCAGGATATTGTCGAAGCTCTTGACCTGGGATTCAGTTCTATAATGGTTGATGGTTCACATCTTTCTTTCAATGAAAATGCTGCATACACAAAATTTATAACATTACTGGCGCACTCAAAAAATATGCTGGTTGAAGCTGAGCTAGGAAGATTGTCAGGGACAGAAGATGATTTGACTGTAGAAGAGTTTGAAGCCAGACTAACAGATGTGAATATGGCATCAAAATTCGTAGATGAGACTGGAATAGATGCTTTGGCAGTGTGTATTGGTAATGTGCACGGAAAGTACCCTGCAAGTGGTCCAAATCTCAGACTTGACCTGCTTAAGGAGCTGCATGCTTTGAGCCTGAAGAAAGGAATTTATCTGGTGCTTCATGGTGCGTCTGGTTTGAGCAAAGAACTTATTAAGGAGTGCATAAATCTTGGTGTTAGAAAGTTCAATGTCAACACCGAAGTAAGGAAAGCATACATGGACTCCCTCATTACCCCCAAGAATGATCTAGTTCATGTCATGGCTTCTGCAAAGGAAGCCATGAAAGCTGTGGTTGCAGAAAAGATGCATCTCTTTGGTTCCGCAGGAAAGGCATAA 4173 0.4227 MASRRAIGFVGVDEFSLEMAHSAIRHGYDVRAFEINNPVIEEIVKLGGVRCSSPSEAGRDVTAVVIRISHIDQTNDLIFGDEGALKGLKPDTVLILRSTILPSFLHKLEGDLAEIHEIDYVVDAYVSYGRSDALNGKLIIASSGRLDAIARAQPILSAMCEKLFTFEGEIGGGSKVKMVNLMLEGIHFINAVEALSLGAKIGIHPWIIYDIISNAAGNSWAFKNYLPLLLKGELDHQILNTFVKELEIILNTSKSLTFPLPILAATHLQLIHGVSLVDSGDDVTVLTKVWEKVYGVKISDAANADAYNPEQLASEFTTDSKSVRRVGFIGLGAMGFGMATHLLSSQFCVVGYDVYKPTLTRFTNAGGLIGNSPAEVSKDVDVLIIMVTNEAQAENVLYGEHGAVSALPHGASIILSSTVSPAYVSQLEHRLHNEGKNLKLVDAPVSGGVKRASLGTLTIMASGTDDALKSAGQVLAALSEKLYIIKGGCGSGSGIKMINQLLAGVHIASAAEAIAFAARLGLNTRLLFDFITISGGTSWMFENRGQHMIDNDYTPCSALDIFVKDMGIVTRESSTWKVPLQLSTIAHQLYLAGSAAGWGRIDDAGVVKVYEMLTGVRVEGKLQAQRKDAMLHSLPPEWPQDHVLDIQTLKESNSKILVVLDDDPTGTQTVHDIEVLTEWTIESLIEQFRKSPKCFFILTNSRSLSSDKASALIKEICRNLDIAAKSVDNIDYSVVLRGDSTLRGCFVQEADAVVSVLGEMDAWIICPFFLQGGRYTIADTHYVDDSDTLVPAGDTEFAKDASFGYKSSNLRDWVEEKANGRILASSVASVSIELLRKGGPNAVCQHLCSLQKGTICIVNAASERDMTVFALGMIKAKLPSSLSCLLAELTGKRFLCRTAASFVSALMGIVSKPPILPSDLGIARERNGGLIVVGSYVPKTTKQVEELKLQCSQFLKSIEVSVEKLAMSPIEEREEEISRTAELADVYLKAHKDTLIMTSRNLITGRTAAESLDINFKVSSALVEIVKRVTTKPRYIIAKNMKGGITSSDLATKALGARCAKIVGQALAGIPLWQLGPESRHPGIPYIVFPGNVGNSTALAEVVKSWTYPIRFTSTKEILNNAEKGGYAVGAFNVYNLEGAEAVVSAAEEEQSPAILQIHPGAFKQGGIPLVACCISAAEQASVPITVHFDHGTLKQDIVEALDLGFSSIMVDGSHLSFNENAAYTKFITLLAHSKNMLVEAELGRLSGTEDDLTVEEFEARLTDVNMASKFVDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELHALSLKKGIYLVLHGASGLSKELIKECINLGVRKFNVNTEVRKAYMDSLITPKNDLVHVMASAKEAMKAVVAEKMHLFGSAGKA* 1391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00262 1390 Pfam Sugar-binding N-terminal domain 657 906 IPR010737 -
Lapu4g00262 1390 Pfam Nucleotide-binding C-terminal domain 930 1099 IPR031475 -
Lapu4g00262 1390 SUPERFAMILY Aldolase 1113 1390 - -
Lapu4g00262 1390 Gene3D - 656 893 IPR037051 -
Lapu4g00262 1390 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 489 611 IPR008927 -
Lapu4g00262 1390 Gene3D - 487 618 IPR013328 GO:0016491
Lapu4g00262 1390 Gene3D - 168 299 IPR013328 GO:0016491
Lapu4g00262 1390 CDD TBP_aldolase_IIB 1115 1388 IPR000771 GO:0005975|GO:0008270|GO:0016832
Lapu4g00262 1390 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 171 282 IPR029154 GO:0051287
Lapu4g00262 1390 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 490 610 IPR029154 GO:0051287
Lapu4g00262 1390 Gene3D - 921 1105 IPR042213 -
Lapu4g00262 1390 Pfam Fructose-bisphosphate aldolase class-II 1114 1389 IPR000771 GO:0005975|GO:0008270|GO:0016832
Lapu4g00262 1390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 163 IPR036291 -
Lapu4g00262 1390 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 170 297 IPR008927 -
Lapu4g00262 1390 NCBIfam ketose-bisphosphate aldolase 1112 1390 IPR000771 GO:0005975|GO:0008270|GO:0016832
Lapu4g00262 1390 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 7 164 IPR006115 GO:0050661
Lapu4g00262 1390 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 325 483 IPR006115 GO:0050661
Lapu4g00262 1390 Gene3D - 319 486 - -
Lapu4g00262 1390 Gene3D - 2 167 - -
Lapu4g00262 1390 SUPERFAMILY YgbK-like 657 1103 - -
Lapu4g00262 1390 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 328 341 IPR002204 GO:0016491
Lapu4g00262 1390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 324 482 IPR036291 -
Lapu4g00262 1390 Gene3D Aldolase class I 1106 1390 IPR013785 -
Lapu4g00262 1390 PANTHER 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED 319 620 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00262 - - gmx:100779987 2435.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00262 4 2636639 2668090 Lapu4g00262 4 2636639 2668090 ECH