Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00204 ATGATAAGAAACTTCGAGAATCTTTGCACTGCCATGGAACCTGTGCTCAAAAGAGTGGTGGGTGAGGAAGTTGAGCGAGTTATGAAGCACTGGTCTCGCTCCTTTACAAGGTCTCCTTCATTGAGACTCCAAGCAATGGAGCAGCCATCAAGCTTGCAACTATGGTTCAGCAAGAGGCTTTCCCTTCCTATTTTCACTGGTAGCAGGATTATTGACGTTGATGAGAACCCCATCAACATCGTTCTGATGAACAAAAGCAACAATAACCAAATGGTCCCCACGAGTCTTCCACATGCCATCAAGCTTGAGATAGTGGTTATTGATGGAGACTTTTCTCTTTCTGAAAACGAGGATTGGACGAGTGATGAATTTAACAGACACATAGTGAAGGAAAGAAATGGGAAACGTCCTTTACTTGCAGGAGAATTGAACTTGATCATGCGAGATGGAATTGCACCAACTGGGGACATTGAATTCACAGATAACTCTAGCTGGATTCGCTGCAGGAAGTTCAGAGTTGCAGTGAGGGTAGCACCAGGGGGTAATCAAGGAGTTCGGATTCGTGAAGGAATCACTGAAGCATTTGTTGTCAAGGATCACCGTGGAGAATTGTACAAAAAACACTACCCTCCAATGCTTCATGACGAAGTGTGGCGCCTGGAAAAGATCGGAAAAGATGGAGCTTTCCACAGAAAGTTGTCTTCTCAGGGCATAAAAACAGTTCAAGAATTTCTTAAACTAGCAGTTGTTGATACTCTTAAGCTAAGAAATATTTTGGGCGTGGGGATGTCAGACAAAATGTGGGAAGCCACAATCAAGCATGCAATGACCTGTGAAATGGGGAGCAAGTTGTACATTTATCGTGGACCACAGTTTACAATTTTTGTTGATCCAATATGCAAATTAATTAGAGCAAATGTCAGTGGACAGACATTCTCTAACAGAGATCAAATCAGTCATTTGAATAAGGCCTATATAGACAAATTGGTGAGAGAAGCATATGCGAGATGGCATGACTTGGAGGAGATAGATGGGGTTCTGAATGATAACATTGCTGTGTTAACCCAAGGTGATCAAACTGCTGCATCAGTAGTCACATATGATCAGAATCAGTATTACAGTGACAAATCTGCCAGCTATGTTGCAAATACCAACACACAAATGGGATGCTGCGAGTGGTCACCGAATGAAGCCTATAGCACAGCACCGTTTGCTAATGGCTTTCATTTTAGTTTCTCAGCAACACAAACAGATGGAAACATGACCGCTTCAGGTTCTAGCTCTGTGGATGTTGACGGGGCCACAACAAGGCAGAACTAG 1320 0.4311 MIRNFENLCTAMEPVLKRVVGEEVERVMKHWSRSFTRSPSLRLQAMEQPSSLQLWFSKRLSLPIFTGSRIIDVDENPINIVLMNKSNNNQMVPTSLPHAIKLEIVVIDGDFSLSENEDWTSDEFNRHIVKERNGKRPLLAGELNLIMRDGIAPTGDIEFTDNSSWIRCRKFRVAVRVAPGGNQGVRIREGITEAFVVKDHRGELYKKHYPPMLHDEVWRLEKIGKDGAFHRKLSSQGIKTVQEFLKLAVVDTLKLRNILGVGMSDKMWEATIKHAMTCEMGSKLYIYRGPQFTIFVDPICKLIRANVSGQTFSNRDQISHLNKAYIDKLVREAYARWHDLEEIDGVLNDNIAVLTQGDQTAASVVTYDQNQYYSDKSASYVANTNTQMGCCEWSPNEAYSTAPFANGFHFSFSATQTDGNMTASGSSSVDVDGATTRQN* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00204 439 Pfam Calmodulin binding protein-like N-terminal domain 52 200 IPR046831 -
Lapu4g00204 439 Pfam Calmodulin binding protein C-terminal domain 283 343 IPR046829 -
Lapu4g00204 439 PANTHER OS02G0177800 PROTEIN 6 413 IPR012416 GO:0005516
Lapu4g00204 439 Pfam Calmodulin binding protein central domain 212 278 IPR046830 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00204 Lapu-Chr4 2026710 2030907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00204 2 345 Calmodulin-binding Proteins AT5G57580 47.714 7.08e-109 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00204 - - gmx:100803213 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00204 4 2026710 2030907 Lapu4g00204 4 2026710 2030907 ECH
Lapu3g03845 3 62028851 62032552 Lapu4g00204 4 2026710 2030907 PCT