Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00173 ATGGAAGATGATCAATTTCCTCAGATCAAAGGTGTTGTTATAATCTCCCTTCCACCCCCAGATAACCCTTCTTTAGGCAAAACCATCACTGCTTTCACTTTCTGTGACCCTTCTTCTCCTCAACCTACACTTCCTCAACAATCCCACCAACACCAAACACATCTTAATGATCACAACAACACTGATCCTCCCCTTCATTCCCAACCATCTAATACTCAGCTTAGTTTTTCACTCAGAAGACTCTTCCACAGCACCCCAGTGAAGTTTTTCTCCTTCTTTGGTGTTCTTCTCTTTGCTCTCTTCCTCTATGGTTCTGTTTCTTCAACCACCACCCTGGAACTGCGTGGCCCCGAGAATGATGGTGATGATGATGGCAAACCCGGATCCTATTTGTTCCCTTTGTATCCTAAATTTGGTGTTTTGGGGCAGAAGAATATGAAGCTTCAACTGGGGAAGCTTGTTCATAAAGAAAAGATTTTGACACAAAGAAAAAATAGGGTTGGTTCTGAAGTAGTGGCCCTTGACTCATCTTCAGTTTTTCCTGTCAGTGGCAACGTTTTCCCAGACGGGTTGTATTTCACTATTTTACGTGTGGGAAATCCTCCAAGAAGTTATTTTCTTGACGTGGATACAGGGAGTGACTTAACTTGGATTCAGTGTGATGCCCCTTGCAGAAGTTGTGGAAAGGGAGCTCATGTCCTATACAAGCCAACAAGATCCAATGTAGTATCATCCATGGACTCTCTTTGCTTGGATGTTCAGAAAAATCAGAAGAATGGGCATCACGAAAGTTTGCAACAGTGTGACTATGAAATTGAATATGCAGATCAGAGTTCTTCCTTGGGGGTTCTTATTAGAGACGAGCTTCATCTTGTAACTATTAATGGATCCAAAACCAAGCTAAATTTTGTTTTTGGGTGTGGATATGATCAAGAAGGCTTACTTTTGAACACATTGGCGAAGACAGATGGAATCATGGGACTGAGCAGGGCAAAAGTTAGCCTACCTTACCAGTTAGCAAGTAAAGGGCTTATTAAGAATTTGGTTGGTCATTGCTTAAGCGATGATGAAGTTGGTGGTGGTTACATGTTCTTGGGTGATGATTTCTTGCCATATTGGGGTATGACTTGGGTACCCATGGCCTATACCCTTAATACGGATTTATACCAAACTGAGATTCTTGGCATAAATTATGGAAATCGGCAACTTAGTTTTGACGGCCAAAGCAAAGTAGGAAAGGTGGTTTTTGATAGTGGCAGTTCTTATACATATTTCCCAAAAGAAGCATACTTGGATCTTGTTACTTCTCTTAATGAAGTTTCTGGGTTGAGACTCGTTCAAGATGATTCAGATACTACTTTACCCATTTGCTGGCAAGCAAATTTCCCAATCAAATCTGTCAGAGATGTCAAGGATTACTTCAAGACCTTAACTCTTCGGTTTGGAAGCAAGTGGTGGATTTTGTCCACAATGTTTCAGATACCTCCAGAGGGTTACTTGATCATTAGTAACAAAGGCCATGTGTGCTTGGGTGTCCTTGATGGTAGTAATGTAAACGATGGATCCTCAATTATTCTTGGAGACATTTCATTCAGAGGATACTTAGTTGTGTACGACAATGCAAAGCAAAAAATTGGTTGGAAGCGAGCAGACTGTGGCATGTCAAGCAGAAGATTGAGAAAGAAAAACAGTTTTATCCCTGATAGCATGCTATAA 1716 0.4114 MEDDQFPQIKGVVIISLPPPDNPSLGKTITAFTFCDPSSPQPTLPQQSHQHQTHLNDHNNTDPPLHSQPSNTQLSFSLRRLFHSTPVKFFSFFGVLLFALFLYGSVSSTTTLELRGPENDGDDDGKPGSYLFPLYPKFGVLGQKNMKLQLGKLVHKEKILTQRKNRVGSEVVALDSSSVFPVSGNVFPDGLYFTILRVGNPPRSYFLDVDTGSDLTWIQCDAPCRSCGKGAHVLYKPTRSNVVSSMDSLCLDVQKNQKNGHHESLQQCDYEIEYADQSSSLGVLIRDELHLVTINGSKTKLNFVFGCGYDQEGLLLNTLAKTDGIMGLSRAKVSLPYQLASKGLIKNLVGHCLSDDEVGGGYMFLGDDFLPYWGMTWVPMAYTLNTDLYQTEILGINYGNRQLSFDGQSKVGKVVFDSGSSYTYFPKEAYLDLVTSLNEVSGLRLVQDDSDTTLPICWQANFPIKSVRDVKDYFKTLTLRFGSKWWILSTMFQIPPEGYLIISNKGHVCLGVLDGSNVNDGSSIILGDISFRGYLVVYDNAKQKIGWKRADCGMSSRRLRKKNSFIPDSML* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00173 571 Gene3D Acid Proteases 373 554 IPR021109 -
Lapu4g00173 571 ProSiteProfiles Peptidase family A1 domain profile. 192 548 IPR033121 -
Lapu4g00173 571 MobiDBLite consensus disorder prediction 36 70 - -
Lapu4g00173 571 Pfam Xylanase inhibitor C-terminal 400 548 IPR032799 -
Lapu4g00173 571 FunFam Aspartyl protease APCB1 372 558 - -
Lapu4g00173 571 SUPERFAMILY Acid proteases 183 552 IPR021109 -
Lapu4g00173 571 PANTHER ASPARTYL PROTEASES 97 546 IPR001461 GO:0004190|GO:0006508
Lapu4g00173 571 Gene3D Acid Proteases 170 367 IPR021109 -
Lapu4g00173 571 PRINTS Pepsin (A1) aspartic protease family signature 524 539 IPR001461 GO:0004190|GO:0006508
Lapu4g00173 571 PRINTS Pepsin (A1) aspartic protease family signature 198 218 IPR001461 GO:0004190|GO:0006508
Lapu4g00173 571 PRINTS Pepsin (A1) aspartic protease family signature 414 425 IPR001461 GO:0004190|GO:0006508
Lapu4g00173 571 Pfam Xylanase inhibitor N-terminal 192 367 IPR032861 -
Lapu4g00173 571 FunFam Aspartyl protease family protein 169 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00173 Lapu-Chr4 1712922 1717698 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00173 174 552 Miscellaneous Gene Families AT1G77480 45.288 1.71e-108 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00173 - - gmx:100810687 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00173 4 1712922 1717698 Lapu4g00173 4 1712922 1717698 ECH