Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00166 ATGGCTCGGTTTCTTCTTTCTCTTTGCATCATCTTCACGATCCTATCTCTCACCTCCTCTCGCGCCATCACCACTCCCTCACACACCACTCTTCTCAACATCTCGCAATCCCTTCACCAAGCCCACCAAATCCTCTCCTTCAACCCCCAACATGTTCTTGAACAAACTTTAACTCAACAAGAAACCCCCACTTCACCTTCTTCCTCTTTCTTCTCCGTTCAACTCCACACAAGGGAAACCCTCTTCAATGAGCGACACCCAGATTACAAAACCCTAGTTTTGTCCCGACTCGACCGCGACTCAGCCCGAGTCAACTCGCTCGAGACCAAACTTCAGCTGGCACTCAATAGCGTCAAAAGATCGGACCTTTACCCGGCCCAGACTGAGATCCGACCCGAAGACCTCTCCACGCCCGTGTCCTCCGGCACCGCCCAGGGAAGCGGCGAGTACTTCTCACGCGTCGGTGTTGGCCAGCCTACAAAGCCCTTCTACATGGTCCTCGACACAGGCTCCGACGTAAACTGGCTCCAATGCAAACCCTGCTCTGATTGTTACCAGCAATCCGACCCGATCTTTGACCCGACAGCATCATCCTCGTACTACCCATTAACCTGCGACGCTCAACAGTGTGATGCCCTTGAAATGTCGGCGTGCAGAAACGGTAGGTGCCTCTACCAAGTTTCCTACGGTGACGGGTCGTTCACAGTAGGGGAGTACGTCACTGAAACGGTGACGTTTGGTGGGTCCGGTTCAGTTAACCGGGTCGCGATCGGTTGCGGGCACGATAACGAGGGGCTATTCGTCGGGGCCGCGGGGCTTCTTGGTCTTGGCGGTGGGCCCTTGTCATTAACCTCCCAAATCAAAGCGTCGTCGTTTTCGTACTGTTTAGTAGACCGTGACTCGGGGAAATCGTCCACGCTCGAGTTCAACTCACCTCGACCCGGTGACTCGGTCACCGCGCCGTTGCTGAAGAACAAGAGGGTGGACACGTTCTACTACGTGGAGCTCACCGGATTTAGCGTCGGCGGTGAGACGGTCCCTGTCCCGCCGGAGACTTTCGCCGTCGACCAGTCCGGTGTCGGCGGGGTGATCGTCGACTCCGGTACCGCGATAACTCGGCTGAAGACTCAGGCCTACAACTCGGTGCGCGACGCATTCAAGAGGATGACTCAGAACCTGCGTCCCGCGGAGGGCGTTGCGCTGTTCGACACGTGCTACGACCTGTCGTCTCTGCAATCGGTGCGCGTGCCGACAGTGTCGTTTCACTTCGCCGGCGATAAGACATGGGCGCTGCCGGCGAAGAATTACCTGATTCCGGTGGACAGCGCCGGAACGTACTGTTTCGCGTTTGCGCCAACGACGTCGTCTCTGTCGATCATAGGGAATGTGCAGCAGCAGGGGACACGTGTCAGTTTCGACCTAGCGAACTCCGTAGTGGGATTCTCTCCCAACAAGTGCTAG 1461 0.5661 MARFLLSLCIIFTILSLTSSRAITTPSHTTLLNISQSLHQAHQILSFNPQHVLEQTLTQQETPTSPSSSFFSVQLHTRETLFNERHPDYKTLVLSRLDRDSARVNSLETKLQLALNSVKRSDLYPAQTEIRPEDLSTPVSSGTAQGSGEYFSRVGVGQPTKPFYMVLDTGSDVNWLQCKPCSDCYQQSDPIFDPTASSSYYPLTCDAQQCDALEMSACRNGRCLYQVSYGDGSFTVGEYVTETVTFGGSGSVNRVAIGCGHDNEGLFVGAAGLLGLGGGPLSLTSQIKASSFSYCLVDRDSGKSSTLEFNSPRPGDSVTAPLLKNKRVDTFYYVELTGFSVGGETVPVPPETFAVDQSGVGGVIVDSGTAITRLKTQAYNSVRDAFKRMTQNLRPAEGVALFDTCYDLSSLQSVRVPTVSFHFAGDKTWALPAKNYLIPVDSAGTYCFAFAPTTSSLSIIGNVQQQGTRVSFDLANSVVGFSPNKC* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00166 486 CDD cnd41_like 149 486 IPR033873 -
Lapu4g00166 486 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 165 176 IPR001969 GO:0004190|GO:0006508
Lapu4g00166 486 FunFam aspartyl protease family protein 2 127 309 - -
Lapu4g00166 486 ProSiteProfiles Peptidase family A1 domain profile. 150 482 IPR033121 -
Lapu4g00166 486 SUPERFAMILY Acid proteases 144 486 IPR021109 -
Lapu4g00166 486 Gene3D Acid Proteases 313 486 IPR021109 -
Lapu4g00166 486 FunFam Aspartyl protease family protein 2 310 486 - -
Lapu4g00166 486 PANTHER ASPARTYL PROTEASES 29 480 IPR001461 GO:0004190|GO:0006508
Lapu4g00166 486 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 363 374 IPR001969 GO:0004190|GO:0006508
Lapu4g00166 486 Gene3D Acid Proteases 124 309 IPR021109 -
Lapu4g00166 486 Pfam Xylanase inhibitor C-terminal 332 482 IPR032799 -
Lapu4g00166 486 Pfam Xylanase inhibitor N-terminal 150 309 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00166 Lapu-Chr4 1651486 1652946 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00166 126 486 Miscellaneous Gene Families AT1G77480 26.108 4.48e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00166 K22683 - gmx:100784849 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00166 4 1651486 1652946 Lapu4g00166 4 1651486 1652946 ECH