Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00165 ATGGAAGCTGCATTAAGCACTGCACTTGCTCTTTCACCCAACCAAGTATTCAATGCAGTAAATCTTGGAGATAAAAATTTTGCTTTGAAATATTCCAAAGATCGGACTGTTGTAATGGCAATGGCAGCCACTGGAATATTAGGAAAAGGTGGAGGTTTGGTGGAGAGGCCAACCAGAGAGACGACAACACCTGGTCGGGAATCTGAATTTGACGTGAGGAAATCGCGGAAAACATCTCCACCATTCCGAGTTTTGCTGCACAATGACAACTTCAACAAGCGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCTGGAATGACAATTGATAATGCAGTTAACATCATGCAGGAGGCACATCATAATGGACTAGCAGTGGTGATCATATGTGCTCAAGTGGATGCTGAAGACCACTGCATGCAGTTGAGAGGAAACGGGCTTTTAAGTTCAATTGAGCCAGCTGATGGTGGTGGTTGTTGA 483 0.4389 MEAALSTALALSPNQVFNAVNLGDKNFALKYSKDRTVVMAMAATGILGKGGGLVERPTRETTTPGRESEFDVRKSRKTSPPFRVLLHNDNFNKREYVVQVLMKVIPGMTIDNAVNIMQEAHHNGLAVVIICAQVDAEDHCMQLRGNGLLSSIEPADGGGC* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00165 160 Gene3D - 76 154 IPR014719 -
Lapu4g00165 160 SUPERFAMILY ClpS-like 76 153 IPR014719 -
Lapu4g00165 160 FunFam ATP-dependent Clp protease adapter protein CLPS1, chloroplastic 76 154 - -
Lapu4g00165 160 Pfam ATP-dependent Clp protease adaptor protein ClpS 77 145 IPR003769 GO:0030163
Lapu4g00165 160 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 6 160 IPR022935 GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00165 Lapu-Chr4 1645770 1648056 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00165 K06891 - gmx:100785379 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00165 4 1645770 1648056 Lapu4g00165 4 1645770 1648056 ECH