Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03944 ATGGCTGATGCATTTGATGAAGAGTGTGACTATCTCTTCAAGGCTGTTCTGATTGGAGACTCTGGAGTTGGGAAATCAAATCTGCTCTCAAGGTTTGCAAAAGATGAATTCCGGTTGGATTCCAAACCCACAATAGGAGTGGAATTTGCTTACCGGAACATCAAGGTTGGAGACAAACTCATCAAAGCTCAAATATGGGACACTGCAGGCCAAGAAAGGTTTAGAGCAATCACAAGTTCATACTACCGAGGAGCCTCAGGGGCAGTGCTGGTGTATGACATATCCATGAGATCAAGTTATGAGAATGTGAGGAAGTGGCTATTGGAGCTGAGAGAGTTTGGAGGGGAAGAGATGGTGGTTGTTCTGGTGGGAAACAAGTGCGATCTGGATCAGTCAAGAGAGGTTGAGAAAGAAGAAGGAAAAGGGTATGCTGAAACAGAAGGGTTATGCTTCATGGAAACCTCTGCTCTGAAGAATCTCAACGTTGAGGAAGTGTTCTTGCAAATGATCACAAGGATTTATGACATGACAAGGCAGAAAAATTTGGCAGCCAAAATGGACGAAAAACCGATTAATCTTCTCAATGGAAAGGAGATTCATGTTGCTGATGAAGTCACTGCTACTAAACAACCTAGTACTTGCTGTTCAAGATGA 654 0.4327 MADAFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGASGAVLVYDISMRSSYENVRKWLLELREFGGEEMVVVLVGNKCDLDQSREVEKEEGKGYAETEGLCFMETSALKNLNVEEVFLQMITRIYDMTRQKNLAAKMDEKPINLLNGKEIHVADEVTATKQPSTCCSR* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03944 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Lapu3g03944 217 SMART ras_sub_4 10 176 - -
Lapu3g03944 217 SMART rab_sub_5 13 176 - -
Lapu3g03944 217 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Lapu3g03944 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Lapu3g03944 217 NCBIfam small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Lapu3g03944 217 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Lapu3g03944 217 PANTHER DRAB11-RELATED 7 186 - -
Lapu3g03944 217 CDD Rab11_like 10 174 - -
Lapu3g03944 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 190 IPR027417 -
Lapu3g03944 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Lapu3g03944 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Lapu3g03944 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Lapu3g03944 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Lapu3g03944 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Lapu3g03944 217 ProSiteProfiles small GTPase Ras family profile. 7 194 IPR001806 GO:0003924|GO:0005525
Lapu3g03944 217 Gene3D - 5 215 IPR027417 -
Lapu3g03944 217 SMART ran_sub_2 18 208 - -
Lapu3g03944 217 FunFam ras-related protein RABA5a 5 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03944 Lapu-Chr3 62911788 62914731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03944 14 166 EF-hand Containing Proteins AT5G27540 29.091 2.49e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03944 K07976 - gmx:100781746 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03944 3 62911788 62914731 Lapu3g03944 3 62911788 62914731 ECH