Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03920 ATGCCAATGGCATATTCCGGCATATTTCAGGGTTTCATCAGATTCAAAACCATGTCGCGGTTTCGCTGCAGTCCTTCTAGACCTTTGTTTCCATCCATTTCCACCACTCCTTTTCACCGCACTGCCATTCGCCTCCGCTCCTCCTCCACCGCGCTTCAAGTCGTCAACGTCACGCGCCCGAGGACCGCCGCGCGACAGGGGACCGTTACGTTGCCGTTTTGGCACCAGCGCAGCTCCAGCTACGGTCGTTTTGCGTACCAGGACGTGTCCAGTGACGATTCCGATGTCGAATTCGCGTCTTCTCTCTCTCAGAGCCAACAAGTGGGTGATTCAACGCTCGAGAACATTGACGAGTGGAGATGGAAGCTGACCATGCTTATGCGCTCCAAAGACGAACAAGAAGTGGTGTCCAGAGAGAAGAAGGACCGTCGCGATTTCGAGCAGCTTTCCACTTTAGCTACCAGGATGGGTTTGTATAGCCGGCAATATGCAAGAGTTCTTGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAACGCCCGCAAAGAGAGGTAGTCTTACCATTTGGTGTTCATAAAGAAGTAGATGCTCATCTCCGTGCCCATCTTTCACGAAAGGCTACAAGCAGTTGGAGTTCTTTAAATGATTCATTGCATAGATCAAGTGATACTACAAGCATTCCAGCCAATGAAGGAATGCATGAACAGCCAGAGCCCATGACTTATAATAGTGTTGTCAAGGAGAAAATCCTTCAACGAAGAAGTTTGCAACTGCGTCATCGGCAACAGGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAACTCTTCCTGCTTTCAAAGAGAAGGATGCATTTTTGAGAGTTATTTCAGAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCGCAATACATATTAGAATCTGAGACCGAGGCTGCACGTGGAGCTGTGTGTAACATAATTTGTACTCAGCCCAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCTGCAGAACGTGGCGAGAAGTTGGGAGAATCTGTTGGATACAAAGTTCGCTTGGAGGGTTTGAAAGGGAGAGATACCCGTCTTCTTTTTTGCACCACAGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGCGGAATGAACGAAGATTTTCTTCTAATTGTCTTGAAGGAACTTCTCCCTCGTCGTCCTGATTTGAGATTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAAGGACTGGACATCGGTTGACACCTTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAACAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCAGATTTTAAGGGATATAGCCTACGCACCCAAGATTCATTGTCCTGTTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGTCACATTGTTAAGAATGAAAGGCCAGGAGCTGTTTTAGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTTCAAGCTCATCCTTTGTTGGGTGATCAGAACCGAGTATTGCTTCTTGCATGTCATGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTGGCGACTAACATGGCCGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTTGACTCTGGAAAAGCAAAAGAAACATCATATGACGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCAGCCCGACAGAGAAGAGGAAGGGCTGGTCGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCAGATGCGTTTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTGAGAACACCTTTGCAGTCCTTGTGTCTGCAAATCAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGAGCTCTACAGCCACCAGAGCCTCTATCGGTTGAAAATGCTATTGAATATTTGAAGATTATTGGGGCCTTAGATGGGGATGAAAATTTAACAGTTTTAGGGCACAAATTGGCAATGCTTCCTGTAGAACCCAAACTTGGCAAGATGCTCATTTTAGGAACCATCTTCAAGTGTTTGGATCCTATAATGACTGTTGTTGCTGGTCTAAGTGTAAGAGACCCATTTGTGATGCCATCTGACAAGAAGGATCTTGCGGAGTCTGCCAAAGCTCAATTTGCTGCTCGTGACTATAGTGATCATCTTGCACTTGTCCGGGCTTATGAGGGTTGGAAAGATGCTGAGACACAGCAAGCTGGTTACGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAGGGCCATTGACTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATCGGTCTTGTCAATAACAAGCCTGAAACCTATAATGCATGGAGTCAAGAAGTGAATCTCCTCCGAGCAGTCATTTGTGCTGGTTTGTTTCCCGGAATATCTTCTGTTGTGAACAAAGATAAGTCAATAGCATTGAAGACAATGGAGGATGGCCAGGTTCTTTTGTATTCTAGCTCTGTAAATGGCTGTGTATCCCGAATTCCATACCCGTGGTTAGTATTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTCAGAGATTCAACTGGTATATCAGATTCGGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTTGATGGTCACTTGAAAATGCTGGGAGGGTATTTGGAGTTTTTCATGAAACCAGAACTAGCCAAGACTTACTTAAGCTTAAAGATGGAACTGGAAGAATTGATACAGAAGAAGCTTCTGGATCCCACGCTGGAAACACAATCACAATCGCATAGTCAGCTTCTTTCAGCTGTTAGATTGTTGGTTTCAGAGGACCAGTGTGAGGGTAGGTTTGTCTTTGGTCGCCAAGTCCCATCACAAGTAAAGAAGGAAACAAACTCCAAAAGTGCAGAGGGGGGTGAAAATTCTAAAAATCAACTGCAAACATTTCTTAACAGGGCTGGACATGAATCACCAACTTACAAAACAAAGCAGCTTAAAAGCTACCAATTCTGTTCTACTGTCATATTTAATGGGCTGAATTTTGTTGGTCAGCCATGCAGCAGCAAGAAATTAGCAGAAAAATCTGCTGCTGCTGAGGCTCTTCTGTGGTTGAAAGGGGATAGCCATTCATCTAATGATATTAACCATGCATCAGTTCTTTTGAAGAAGAGCAACAGGAAAAGTAGGAAGAAATCGTTTAGTGGCGCTAAATGGAGTTGA 3555 0.4332 MPMAYSGIFQGFIRFKTMSRFRCSPSRPLFPSISTTPFHRTAIRLRSSSTALQVVNVTRPRTAARQGTVTLPFWHQRSSSYGRFAYQDVSSDDSDVEFASSLSQSQQVGDSTLENIDEWRWKLTMLMRSKDEQEVVSREKKDRRDFEQLSTLATRMGLYSRQYARVLVFSKAPLPNYRPDLDDKRPQREVVLPFGVHKEVDAHLRAHLSRKATSSWSSLNDSLHRSSDTTSIPANEGMHEQPEPMTYNSVVKEKILQRRSLQLRHRQQDWQESPEGQKMLEFRRTLPAFKEKDAFLRVISENQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGLKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTGHRLTPYNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVADFKGYSLRTQDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQAHPLLGDQNRVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSRALQPPEPLSVENAIEYLKIIGALDGDENLTVLGHKLAMLPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKAQFAARDYSDHLALVRAYEGWKDAETQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVNNKPETYNAWSQEVNLLRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGCVSRIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQKKLLDPTLETQSQSHSQLLSAVRLLVSEDQCEGRFVFGRQVPSQVKKETNSKSAEGGENSKNQLQTFLNRAGHESPTYKTKQLKSYQFCSTVIFNGLNFVGQPCSSKKLAEKSAAAEALLWLKGDSHSSNDINHASVLLKKSNRKSRKKSFSGAKWS* 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03920 1184 SMART helicmild6 580 686 IPR001650 -
Lapu3g03920 1184 Pfam Double-stranded RNA binding motif 1087 1149 IPR014720 -
Lapu3g03920 1184 Gene3D - 728 830 - -
Lapu3g03920 1184 MobiDBLite consensus disorder prediction 216 246 - -
Lapu3g03920 1184 MobiDBLite consensus disorder prediction 216 236 - -
Lapu3g03920 1184 Pfam DEAD/DEAH box helicase 296 447 IPR011545 GO:0003676|GO:0005524
Lapu3g03920 1184 SMART ha2_5 748 839 IPR007502 GO:0004386
Lapu3g03920 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 865 IPR027417 -
Lapu3g03920 1184 Pfam Helicase associated domain (HA2) 749 835 IPR007502 GO:0004386
Lapu3g03920 1184 SUPERFAMILY dsRNA-binding domain-like 1084 1155 - -
Lapu3g03920 1184 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 463 IPR014001 -
Lapu3g03920 1184 CDD SF2_C_RHA 543 694 - -
Lapu3g03920 1184 FunFam DExH-box ATP-dependent RNA helicase DExH3 548 704 - -
Lapu3g03920 1184 Pfam Helicase conserved C-terminal domain 554 685 IPR001650 -
Lapu3g03920 1184 SMART DRBM_3 1087 1150 IPR014720 -
Lapu3g03920 1184 FunFam DExH-box ATP-dependent RNA helicase DExH3 239 464 - -
Lapu3g03920 1184 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 905 987 IPR011709 -
Lapu3g03920 1184 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1086 1151 IPR014720 -
Lapu3g03920 1184 SMART ultradead3 284 477 IPR014001 -
Lapu3g03920 1184 CDD DEXHc_RHA-like 302 462 - -
Lapu3g03920 1184 Gene3D - 1066 1154 - -
Lapu3g03920 1184 PANTHER ATP-DEPENDENT RNA HELICASE 233 1044 - -
Lapu3g03920 1184 Gene3D - 239 464 IPR027417 -
Lapu3g03920 1184 FunFam Putative ATP-dependent RNA helicase DHX36 728 833 - -
Lapu3g03920 1184 Gene3D - 549 704 IPR027417 -
Lapu3g03920 1184 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 552 726 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03920 Lapu-Chr3 62705677 62718049 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03920 K14442 - gmx:100791006 2053.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03920 3 62705677 62718049 Lapu3g03920 3 62705677 62718049 ECH