Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03916 ATGAAGTTTTGGGCAAAGCATCGTGGGGTTTATTCGAATGTTACAGGTTTTCTTGGCGGTATAAACTGGGCGTTGCTTGTTGCACTAATATGCCAGCTATTTCCTAATGCACTGCCCAATATGTTAGTGTCTCGATTCTTCAGGGTATATACTAAGTGGCGTTGGCCAAATCCAGTAATGCTTTGTGCTATTGAAGAGGGATCACTTGGACTTCAAGTTTGGGATCCTAGAAGATATCCCAAGGATAGATTCCATCTAATGCCAATAATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTGTCGTCGAGTACATTGCGTATTATGATGCAGGAATTTCAGCGGGGAAATGAAGTATGTGAGGCTATGGAGGCTGACAAGGCTGATTGGGACACTCTTTTTGAACCGTATCCCTTTTTTGAAGCTTATAAGAATTATTTGCAGATAGACATATCAGCGGAGAATGCTGACGATCTCAGAAAATGGAAAGGCTGGGTTGAGTCTCGCCTGCGCCAGTTGACGTTGAAAATTGAGAGGCACACCTATGGCATGCTTCAGTGTCATCCACATCCAGGTGATTTTCCTGACAAATCCAGACCTTTCCACTGCTCCTACTTCACGGGACTGCAACGTAAGCAAGGTGTTCCTGTCAATGGTGGTGAACGGTTTGATATAAGACTAACTGTTGAAGAATTTAAGCATTCTGTCAACATGTACACTCTATGGAAACCTGGAATGGATATCCATGTCTCCCATGTGAAACGTCGTGGCATACCCACCTTCGTATTTCCTGGTGGTGTTCGACCTTCACATCCATCTAAAGTAACTTGGGAGAGTAAGCGGAGTTCAGAATTAAGTATTTCTGGCCATGATCAGGAAGAACAGTCTCAAGAAGGTGAAGTTGCTGTATTAGGAGCAAATGATGATAGGAAGAGAAAACTAGCCGGAGATAGTGTGGATAGCTTGAGAAATTTCAAGTCCCTTGCATCTTTGCCTCCCTCAAGCAGGGAAGTTCACGAGGATGGAAATCCTGTTAGCATTGATAGTGGTTGCTATGTGAAATATATTGGTTCGGAAATCAATAGTACTAGTGAACAACAGAGTGAGAAACCTGATTTGGAATCTACAGGGGAATGTCCTGGGGATTGGGAAACCAAC 1164 0.433 MKFWAKHRGVYSNVTGFLGGINWALLVALICQLFPNALPNMLVSRFFRVYTKWRWPNPVMLCAIEEGSLGLQVWDPRRYPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMMQEFQRGNEVCEAMEADKADWDTLFEPYPFFEAYKNYLQIDISAENADDLRKWKGWVESRLRQLTLKIERHTYGMLQCHPHPGDFPDKSRPFHCSYFTGLQRKQGVPVNGGERFDIRLTVEEFKHSVNMYTLWKPGMDIHVSHVKRRGIPTFVFPGGVRPSHPSKVTWESKRSSELSISGHDQEEQSQEGEVAVLGANDDRKRKLAGDSVDSLRNFKSLASLPPSSREVHEDGNPVSIDSGCYVKYIGSEINSTSEQQSEKPDLESTGECPGDWETN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03916 388 FunFam Nuclear poly(A) polymerase 4 140 255 - -
Lapu3g03916 388 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 140 266 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lapu3g03916 388 FunFam Putative poly(A) polymerase gamma 1 136 - -
Lapu3g03916 388 MobiDBLite consensus disorder prediction 273 311 - -
Lapu3g03916 388 SUPERFAMILY PAP/OAS1 substrate-binding domain 2 138 - -
Lapu3g03916 388 MobiDBLite consensus disorder prediction 276 299 - -
Lapu3g03916 388 MobiDBLite consensus disorder prediction 360 388 - -
Lapu3g03916 388 Gene3D Poly(A) polymerase predicted RNA binding domain 140 255 - -
Lapu3g03916 388 Pfam Poly(A) polymerase predicted RNA binding domain 141 198 IPR007010 GO:0003723|GO:0043631
Lapu3g03916 388 PANTHER POLY A POLYMERASE 1 301 - -
Lapu3g03916 388 Pfam Poly(A) polymerase central domain 1 138 IPR007012 GO:0043631|GO:1990817
Lapu3g03916 388 Gene3D - 2 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03916 Lapu-Chr3 62684335 62692193 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03916 K14376 - gmx:100816915 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03916 3 62684335 62692193 Lapu3g03916 3 62684335 62692193 ECH