Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03688 ATGGCTATCCTCTCTCAATCCACTGCCAGTTTCTCCCCTTCCTTCGTCTCCACTCGCTCCGATTTCACTCGCCGCACTCGCTTCCCCTGCCGCGTCACCTTCCGCCGTCGTCTCGTCGTTTCGTCCAGCTTTAACTCTTCCAAGTCCCCTGGCGCCGGCGGCTCCCTCTCGCCGGACAACGGAGGCGACGTCTCATACGAACTGCACCACGACTTCTCGCCGCAACGCCGCCGCAGTGGCTCGCCTGTGTTCGTCACGCTTCCGGTGAACTCCGTCAGCCGGGAGGGCGGCCGCGTCTTGAGGCCCAAGGCCATGATGTTCTCGCTCAAGGCGCTCGTCACGGCCGGCGTCGAAGGCGTCGTTGTCGAGATTTGGTGGGGCTTGGTTGAGAAGAACAAACCTAGGGTTTACGATTGGAGAGGGTACGAGGAACTCGTCGCGATGGCGTGCAAGTGTGGCCTTAAGGTTCGAGCGGTTCTCGCGTTTCATCAGCATGGCGCGGGACCTGATGATCCTAATTGGATACCGCTTCCTCTATGGGTGCTCGATGAGATACAGAAAGATGTAGAGTTAGCATATTGTGACCGGTTTGGAAGAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTTCCTGTGCTATGTGGTCGTTCTCCTGTTCAAGTGTATGCTGATTTTATGAGGGATTTTAGGGACAATTTCAGGTCTTTGCTCGGTGTTATCATTACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCCTCACTAGAGCCGAATTTGACATGGTCTCATGAACTTGGAGAATTCCAATGCTATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATTGGAAGGCGTGAATGGGGAAATGGTGGTCCATTTGGTACTGGAAGTTTGATGCAAAATCCTGAGCATACTGATTTTTTCAAAAATGATGGTGGTTCTTGGGACACACCATATGGTAAATTTTTCCTTGAATGGTACTCAGATATGTTGCTGCTGCATGGGGAAAGGATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAGGTCCATATATCCGCAAAATTGGCTGCCATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGTTAACAGCTGGCTATTATAATACTTTTAACCGGGATGGATACTTACCCATTGCTCGCATGTTTAGTAAGTACGGATTCTCGATGTGCTGCTCTTGTTTTGAAATGCAAGATGCAGTAATGCAGAAGATCAATCCTGATGGTAGCCCTGAAGGTTTTCTCAGACAGCTTTTGCTGGCTGCTAGGCTCTGTGACCTATCACTTGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCATTCACCCAGGTGCTGAAGATGTCAAAATTCTACTCGAATGGGATCGAGAAGCGACCTTTCTCGTTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTAAGACAAATGTCTAATGGAAATGTTTTTCGAGCCAGATTATATTCTGTTGGTGACAAACGGTTTAAGACCGCACCGGTGATGGCAGAGGCGGGACTGTTGTACCACCTATATCAGTACTCTTGA 1650 0.4788 MAILSQSTASFSPSFVSTRSDFTRRTRFPCRVTFRRRLVVSSSFNSSKSPGAGGSLSPDNGGDVSYELHHDFSPQRRRSGSPVFVTLPVNSVSREGGRVLRPKAMMFSLKALVTAGVEGVVVEIWWGLVEKNKPRVYDWRGYEELVAMACKCGLKVRAVLAFHQHGAGPDDPNWIPLPLWVLDEIQKDVELAYCDRFGRRNIEYISLGCDILPVLCGRSPVQVYADFMRDFRDNFRSLLGVIITGVQIGMGPGGELRYPSFSSLEPNLTWSHELGEFQCYDKYMLASLNASARNIGRREWGNGGPFGTGSLMQNPEHTDFFKNDGGSWDTPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKLAAIHWHYVTQSHPSELTAGYYNTFNRDGYLPIARMFSKYGFSMCCSCFEMQDAVMQKINPDGSPEGFLRQLLLAARLCDLSLEGQNFSTNLDDGAFTQVLKMSKFYSNGIEKRPFSFNFVRMDKRLFESRNWDRFTRFVRQMSNGNVFRARLYSVGDKRFKTAPVMAEAGLLYHLYQYS* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03688 549 Pfam Glycosyl hydrolase family 14 86 508 IPR001554 GO:0000272|GO:0016161
Lapu3g03688 549 Gene3D Glycosidases 73 536 - -
Lapu3g03688 549 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 45 515 IPR001554 GO:0000272|GO:0016161
Lapu3g03688 549 SUPERFAMILY (Trans)glycosidases 79 531 IPR017853 -
Lapu3g03688 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 364 380 IPR001554 GO:0000272|GO:0016161
Lapu3g03688 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 159 180 IPR001554 GO:0000272|GO:0016161
Lapu3g03688 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 116 130 IPR001554 GO:0000272|GO:0016161
Lapu3g03688 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 328 347 IPR001554 GO:0000272|GO:0016161
Lapu3g03688 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 381 392 IPR001554 GO:0000272|GO:0016161
Lapu3g03688 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 399 422 IPR001554 GO:0000272|GO:0016161
Lapu3g03688 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 137 155 IPR001554 GO:0000272|GO:0016161
Lapu3g03688 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 251 273 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03688 Lapu-Chr3 60316755 60320523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03688 67 542 Glycoside Hydrolase AT4G17090 48.156 5.63e-153 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03688 K01177 - gmx:100805981 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03688 3 60316755 60320523 Lapu3g03688 3 60316755 60320523 ECH