Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03687 ATGCCGGGTCTTGTTTCCGTGAAAACCCCACCCGAGGCTCAGCCGCTCCGAATATCGGTACCCAACACTCCGACGCAGAGATCCGAAGGGAACAACATGCACAGCAAAACACCTTCTCCACTTCCAAAGAAACCGCCCTCACCATCCCCATCTCGTTCCTCAAAGAAGAAAACCCCCGAAACCCCTCCCAACGCGGTTCTCTCTGATGCCTCTCTCGACAACCCCGATCTCGGTCCCTTCCTACTTAAACTCGCGCGTGACACCATCGCCTCCGGTGACGGGCCCGCCAAGGCCCTCGACTTCGCCCTCCGCGCCTCCAAGTCCTTCGAGCGCTGCGCCGTCGACGGCGAGCCCAGCCTCGACCTTGCCATGAGCCTCCACGTCCTCGCTGCCATCTACTGCAGCCTCGCGCGCTTCGAGGAAGCCGTCCCCGTCCTCGAACGCGCCATACAGGTTCCCGACGTCGCGCGTGGCGCTGATCACGCCCTCGCCGCCTTCTCCGGCTACATGCAGCTCGGCGACACCTTCTCCATGCTCGGCCAGGTCGACCGATCCATCTCCTGCTACGACCAGGGCCTCCAGATCCAGATCCAAGCCCTGGGCGACACCGATCCCCGCGTCGGTGAAACTTGCCGATACTTGGCGGAGGCGAATGTGCAAGCGATGCAGTTTGACAAAGCGGAGGAGCTGTGTAAGAAAACTCTGGAGATTCATCGCGTGCATAGTGAACCGGCTTCGCTTGAGGAAGCTGCCGATAGGAGGCTTATGGCACTGATTTGCGAGGCCAAAGGAGATTATGAATCGGCATTGGAGCATCTTGTGCTTGCTAGCATGGCTATGATTGCAAATGGTCAGGATAATGAGGTTGCGTCGATTGATGTTAGTATTGGGAATATTTACATGTCACTTTGTCGTTTTGATGAGGCGATTTTCTCGTATCAGAAGGCACTTACTGTGTTTAAGTCTGCCAAGGGGGAGAACCACCCCTCTGTTGCGTCTGTTTTTGTGCGGCTGGCTGATTTGTACCACCGGACTGGGAAGCTTCGTGAGTCGAAATCGTACTGTGAGAATGCACTCAGGATTTACTCAAAACCGGTGCCGGGTACCACTGCGGAGGAGATTGCCGGTGGCTTGACAGAGGTTTCAGCGGTTTTTGAATCTGTGGATGAGCCAGAGGAGGCGCTCAAGCTGTTAACCCGGGCTATGAAGTTGTTGGAGGATAAGCCAGGGCAGCAGAGCACTATTGCGGGGATTGAGGCACGAATGGGAGTGATGTATTACATGATTGGGAGGTATGAAGACTCAAGGAACTCATTTGAGAGTGCTGTTGCAAAACTCAGGGCCAGTGGGGAGAGGAAGAGTGCCTTCTTTGGAGTTGTTCTGAACCAGATGGGGTTGGCGTGTGTTCAACTGTTCAAGATAGATGAGGCTGCTGAATTGTTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGCCCGTGTCATCAAGATACTCTTGGGGTGTACAGCAATCTTGCAGCTACATATGATGCTATGGGGAGAGTGGGAGATGCGATTGAAATCTTAGAATATGTCCTTAAGTTGAGGGAGGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGTCTGGCTGAGCTTCTGAAAGAAGCAGGCAAGACACGAGACAGAAAAGCAAAATCTCTGGAAAACCTTATTGATCCTGGTTCAAATTGTACCACCAAATTCCATCCGTTTCCGGAAAATGTTGAAAGCAAATTTTTATTCGAGTGA 1785 0.5294 MPGLVSVKTPPEAQPLRISVPNTPTQRSEGNNMHSKTPSPLPKKPPSPSPSRSSKKKTPETPPNAVLSDASLDNPDLGPFLLKLARDTIASGDGPAKALDFALRASKSFERCAVDGEPSLDLAMSLHVLAAIYCSLARFEEAVPVLERAIQVPDVARGADHALAAFSGYMQLGDTFSMLGQVDRSISCYDQGLQIQIQALGDTDPRVGETCRYLAEANVQAMQFDKAEELCKKTLEIHRVHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAVFESVDEPEEALKLLTRAMKLLEDKPGQQSTIAGIEARMGVMYYMIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPGSNCTTKFHPFPENVESKFLFE* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03687 594 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 30 572 - -
Lapu3g03687 594 Gene3D Tetratricopeptide repeat domain 70 165 IPR011990 GO:0005515
Lapu3g03687 594 Pfam MalT-like TPR region 128 276 IPR041617 -
Lapu3g03687 594 Gene3D Tetratricopeptide repeat domain 278 457 IPR011990 GO:0005515
Lapu3g03687 594 Pfam Tetratricopeptide repeat 289 363 - -
Lapu3g03687 594 Pfam Tetratricopeptide repeat 460 532 - -
Lapu3g03687 594 Coils Coil 541 561 - -
Lapu3g03687 594 SUPERFAMILY TPR-like 165 363 IPR011990 GO:0005515
Lapu3g03687 594 MobiDBLite consensus disorder prediction 51 68 - -
Lapu3g03687 594 Gene3D Tetratricopeptide repeat domain 166 277 IPR011990 GO:0005515
Lapu3g03687 594 SUPERFAMILY TPR-like 418 558 IPR011990 GO:0005515
Lapu3g03687 594 MobiDBLite consensus disorder prediction 16 38 - -
Lapu3g03687 594 SMART tpr_5 416 449 IPR019734 GO:0005515
Lapu3g03687 594 SMART tpr_5 250 283 IPR019734 GO:0005515
Lapu3g03687 594 SMART tpr_5 166 199 IPR019734 GO:0005515
Lapu3g03687 594 SMART tpr_5 332 365 IPR019734 GO:0005515
Lapu3g03687 594 SMART tpr_5 500 533 IPR019734 GO:0005515
Lapu3g03687 594 SMART tpr_5 290 323 IPR019734 GO:0005515
Lapu3g03687 594 SMART tpr_5 458 491 IPR019734 GO:0005515
Lapu3g03687 594 SMART tpr_5 375 408 IPR019734 GO:0005515
Lapu3g03687 594 SMART tpr_5 123 156 IPR019734 GO:0005515
Lapu3g03687 594 SMART tpr_5 208 241 IPR019734 GO:0005515
Lapu3g03687 594 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 452 569 - -
Lapu3g03687 594 Gene3D Tetratricopeptide repeat domain 458 569 IPR011990 GO:0005515
Lapu3g03687 594 ProSiteProfiles TPR repeat profile. 290 323 IPR019734 GO:0005515
Lapu3g03687 594 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03687 Lapu-Chr3 60300079 60303738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03687 168 335 Glycosyltransferase AT3G04240 25.714 7.77e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03687 - - gmx:100815100 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03687 3 60300079 60303738 Lapu3g03687 3 60300079 60303738 ECH