Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03662 ATGGATGATGGTCCTCCGAAACTAAAAATCATTCCTGATCACTTTCAAGTTCCAACATCAAGTTTAGAATCCCCTGAGAGCAGAACATCATCTATTACGGAAGCTGGAACTGATCAATCTTCAAGGTCCTCACACCATCAGCGGACTCGAAGGAAATTAAGGACAGCTTTCATGTTGAACCTGTTTTCTCCTAGGCGACTGTCATGGGGTTCCAGTACTGGAGGTCAGGAAAAGGTTGAGCTAACAGCTGCAGAAGTAGAATCACTTCGATCAGAACTTGCTGATATAGAGGAGAGGGAAGCTCACTTGAAAGCTCAGTTGGAACATATTGATGAAGTTTTGCGGTCCGCTCGTTTATCTGGATATTTATACATTCGAACTAGATGGGCAGCACTACCTGGGGAACCTGCACCTATAGATGATACTGAAGTAGATGATCGGCTTCCTCGTTTTGTCGTTCTCCATGGAGCATGTATATTTTTATATCTGTTGTGTACAGATCTAAGCCCCCAGGATTCAACCCTTCTATCTGATATTATTGAAGTAGGGAGTTTACCATGTTTTAAGCAAGAAGATGATGAAATTCAGTGGACTCTTGGTTATCAGCTTTACAAAGCGAATGCAAATTGGAATCTGATACATTTTGTAAAGCTGACTGCAAACGGGAATCTGATACTTCAGTTCCCAATGGTTCGATTTAGATGTAATATAAGTATACCTTGTTTGGTGAGTTTAAGTGGTGAAAGGCAAAATAGCCATGTCATTCACTTTTCATCTTGCAAATGGTCTGCCACTGAGAACAATCTACTCGAACCCAAGAAGATGGCCTCACAGGTTTGCAAATCTGCTTCCAGAGCCGCGAGGTCCCTTCTCTCTGCTTCCAAAGCCTCTCGTTTTCACTCTCAAGGACGTGCGGTTGGGGCTGCTGCGGCTGTTTCATTGAGCAGCAAGGTGCCTCTTTTGGCCTCCAATTTTGGCAGGGGCGGTTCTGGAAGTGGATCCGCGTCATCTTGGATTTCAGGAGCTCTTGCTCTTCCTGCTGCAGCTTACATGTTCCAAGATCAGGAGGTGCACGCGGCCGAGCTGGAGCGCACTTTCATTGCCATCAAGCCTGATGGAGTGCAGAGAGGGCTGATTTCTGAGATTATATCTCGTTTTGAGCGGAAAGGGTACAAGCTTGTGGGAATTAAAGTAGTGATTCCTTCAAAGGACTTTGCCAAACAGCACTATCACGACCTGAAAGAAAGACCCTTTTTCGATGGGCTGTGTGATTTCCTAAGCTCTGGCCCTGTTATTGCAATGGTGTGGGAAGGACAGGGAGTTATTTCCTATGGCAGAAAGCTAATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATTAGGGGTGATCTGGCTGTCGTTGTTGGAAGAAATATCATCCATGGGAGTGATGGTCCCGAGACTGCCAAGGATGAGATTAAGTTGTGGTTTAAGCCAGAGGAGTTGGTTAGTTTCACTAGCAATGCGGAGAAGTGGGTTTACGGTGCCAATTGA 1539 0.4529 MDDGPPKLKIIPDHFQVPTSSLESPESRTSSITEAGTDQSSRSSHHQRTRRKLRTAFMLNLFSPRRLSWGSSTGGQEKVELTAAEVESLRSELADIEEREAHLKAQLEHIDEVLRSARLSGYLYIRTRWAALPGEPAPIDDTEVDDRLPRFVVLHGACIFLYLLCTDLSPQDSTLLSDIIEVGSLPCFKQEDDEIQWTLGYQLYKANANWNLIHFVKLTANGNLILQFPMVRFRCNISIPCLVSLSGERQNSHVIHFSSCKWSATENNLLEPKKMASQVCKSASRAARSLLSASKASRFHSQGRAVGAAAAVSLSSKVPLLASNFGRGGSGSGSASSWISGALALPAAAYMFQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVVIPSKDFAKQHYHDLKERPFFDGLCDFLSSGPVIAMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNAEKWVYGAN* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03662 512 CDD NDPk_I 363 492 - -
Lapu3g03662 512 SMART ndk_5 362 499 IPR034907 -
Lapu3g03662 512 Coils Coil 79 113 - -
Lapu3g03662 512 SUPERFAMILY Nucleoside diphosphate kinase, NDK 362 509 IPR036850 -
Lapu3g03662 512 Pfam Nucleoside diphosphate kinase 363 496 IPR034907 -
Lapu3g03662 512 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 354 510 - -
Lapu3g03662 512 MobiDBLite consensus disorder prediction 17 42 - -
Lapu3g03662 512 FunFam Nucleoside diphosphate kinase 358 510 - -
Lapu3g03662 512 Hamap Nucleoside diphosphate kinase [ndk]. 362 497 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Lapu3g03662 512 MobiDBLite consensus disorder prediction 1 50 - -
Lapu3g03662 512 Gene3D - 358 512 IPR036850 -
Lapu3g03662 512 PRINTS Nucleoside diphosphate kinase signature 365 387 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Lapu3g03662 512 PRINTS Nucleoside diphosphate kinase signature 473 492 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Lapu3g03662 512 PRINTS Nucleoside diphosphate kinase signature 450 466 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Lapu3g03662 512 PRINTS Nucleoside diphosphate kinase signature 429 446 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Lapu3g03662 512 PRINTS Nucleoside diphosphate kinase signature 409 428 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Lapu3g03662 512 ProSitePatterns Nucleoside diphosphate kinases active site. 473 481 IPR023005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03662 Lapu-Chr3 60082346 60091719 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03662 - K00940 aprc:113853674 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03662 3 60082346 60091719 Lapu3g03662 3 60082346 60091719 ECH