Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03659 ATGGAAAAGCTTATTTGCATGTTCCCTTTCCTGCTTCTTCTTCTCTTGGCTCCTCCTTTCACCTCTGCTGGCCATGACTACGGTCAAGCTCTCAGCAAGAGCCTTCTATTCTTTGAAGCTCAGAGATCTGGCTACCTTCCCCACAACCAGAGAGTCACATGGAGAGCACATTCTGGTCTGCAAGATGGCAAAGCTAGCGGGGTGGATCTAGTTGGAGGGTACTATGATGCAGGGGACAATGTGAAGTTCGGGTTACCCATGGCGTTTACCGTTACAATGATGTCGTGGAGCATCATTGAATACGGCAAACAAATGGCTGCTAGCGGTGAGCTCGGTCACGCCATGGAAGCAGTTAAGTGGGGTACAGACTACTTCATCAAAGCACACCCCGAGGCCAATGTTCTCTACGGAGAGGTGGGAGACGGAAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACAACGGACCGTCACGCTTACAAGATCGATCCGAGCAATCCCGGGTCGGATCTCGCCGGAGAAACGGCAGCCGCTATGGCCGCCGCATCCATTGTTTTCCGACGCACTAACCCTGCTTATTCCCACGAACTTCTGAGCCACGCCTACCAGCTGTTCGATTTTGCTGACAAATACAGAGGCAAATACGACAGCAGCATTACTGTTGCTCAGAAGTATTACAGATCAATCAGTGGCTACAATGATGAATTGCTCTGGGCTGCTGCTTGGTTATATCAAGCATCTAACAATCAGTATTACTTGGATTACCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGACCATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGGGTTCAGACATTGGTTGCCAAGTTCTTGATGCAGGGCAAGGCTGCCCATCATGCACCAGTTTTCGAGAGATATCAGCAGAAGGCTGAATCTTTTATGTGTTCATGTCTTGGAAAGGGTTCTCGCAATGTTCAGAAGACTCCTGGTGGTCTCATCTTCCGCCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCCTCATTTTTAGCCACTGTCTATTCTGACTACCTTGCTTCATCTAGTAGGAACTTGAGATGTAATTCAGGCAGTGTTGCCCCTGCAGAGCTTCTCTCCCTTGCAAAGTCTCAGGTGGACTATCTTCTTGGAAACAACCCAAGAGCAACTAGTTACATGGTGGGCTATGGAAACAACTTCCCGCAAAGAGTTCATCACCGAGGTTCATCCATTGTTTCAATCAAGGTTAACCCTTCATTTGTCAGCTGCCGTGGAGGTTATGATACTTGGTTTAGCAGCAAAAAGAGTGACCCCAACCTACTCACTGGTGCTCTTGTTGGTGGACCTGATGCGTATGATGACTTTGCTGATCATAGAGATAATTACGAGCAGACAGAGCCAGCAACCTATAACAATGCTCCTCTCATTGGCATTCTAGCACGTCTGAATGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGTTGTTCCCGCTGCTAAGCCTGTTGTTATCAAGCCTCAACCATCCCCTAATACCAAGACAACTCCATCTCCAGCTTCATGGTCAGGCCCAATTTCTATTGAACAGAAAATGACCACCTCATGGGTTGCCAATGGAAAAACTTATTACAGATACTCAACAGTGGTGACAAACAAATCTAACAAAAGTCTCAATTCTCTCAATCTTTCGATCTCCAAGCTTTATGGTCCAATCTGGGGTCTCACTAAGTCTGGTGATTCCTACACATTCCCATCATGGCTCAGCTCACTAGCAGCAGGCAAAAGTCTTGAGTTTGTTTACATCCATTCTACTTCTCCAGCAGATGTCTCTGTGGCTAACTACGTGTTGGCCTAA 1875 0.4731 MEKLICMFPFLLLLLLAPPFTSAGHDYGQALSKSLLFFEAQRSGYLPHNQRVTWRAHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAASGELGHAMEAVKWGTDYFIKAHPEANVLYGEVGDGNTDHYCWQRPEDMTTDRHAYKIDPSNPGSDLAGETAAAMAAASIVFRRTNPAYSHELLSHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWTMTEFGWDVKYAGVQTLVAKFLMQGKAAHHAPVFERYQQKAESFMCSCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASSSRNLRCNSGSVAPAELLSLAKSQVDYLLGNNPRATSYMVGYGNNFPQRVHHRGSSIVSIKVNPSFVSCRGGYDTWFSSKKSDPNLLTGALVGGPDAYDDFADHRDNYEQTEPATYNNAPLIGILARLNGGHGGYNQLLPVVPAAKPVVIKPQPSPNTKTTPSPASWSGPISIEQKMTTSWVANGKTYYRYSTVVTNKSNKSLNSLNLSISKLYGPIWGLTKSGDSYTFPSWLSSLAAGKSLEFVYIHSTSPADVSVANYVLA* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03659 624 Pfam Glycosyl hydrolase family 9 27 486 IPR001701 GO:0004553|GO:0005975
Lapu3g03659 624 SMART CBM49_2 532 612 IPR019028 GO:0030246
Lapu3g03659 624 Gene3D - 24 492 IPR012341 GO:0005975
Lapu3g03659 624 Pfam Carbohydrate binding domain CBM49 532 609 IPR019028 GO:0030246
Lapu3g03659 624 FunFam Endoglucanase 23 494 - -
Lapu3g03659 624 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 462 480 IPR033126 -
Lapu3g03659 624 PANTHER ENDO-1,4-BETA-GLUCANASE 8 490 - -
Lapu3g03659 624 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 388 414 IPR018221 -
Lapu3g03659 624 SUPERFAMILY Six-hairpin glycosidases 25 501 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03659 Lapu-Chr3 60057589 60063301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03659 19 624 Glycoside Hydrolase AT1G64390 80.198 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03659 K01179 - gmx:100801949 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03659 3 60057589 60063301 Lapu3g03659 3 60057589 60063301 ECH