Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03616 ATGCCTTCTCCTTCAGGTACTTACTCAACCTCTATCGTAAGAGTATTTGATTGCATTGCACTGTCACTTTCCCTCGTAACCGATTTCTGTTTCACAGCTCGCAGACTCACAATGGCCGCGATATCGAACTCCTTCTCACTCAAGCACCGTTTCTCTCTCGCGCGTCCGCAAACTCCTTTTCTCGCTCCAGCTCCTCCTTCTTCCACCTATGTCAAATTCAGAAGATGCTACGCCTCATTCGCCAACGAGAATAGCGAGTATGTGATCGTTGGCGGTGGAAATTCCGCGGGATATGCTGCACGCACTTTCGTCGAGCACGGCATGGCGGATGGACGCCTCTGTATTGTTACTAAAGAGCCATTCGCACCTTACGAGCGTCCTGCTCTGACGAAAGCGTATCTGTTCCCGCCGGATAAGAAACCAGCGCGTCTTCCTGGCTTTCACACGTGTGTTGGATCCGGTGGAGAGAGGCAAACTCCAGAGTGGTATAAAGAGAATGGGATAGAGATGTTGTATGAAGATCCAGTAAAAGATATTGATATTGAAAAGCAAACCTTGACAACAAACACTGGAAAACTTCTGAAGTATGGTTCGCTTATTATTGCAACAGGATGTACAGCATCAAGGTTTCCAGAGAAAATTGGGGGAAACCTACCTGGTGTTCACTATATCCGGAATGTTGCAGATGCTGATGCACTGATTTTGTCATTGGAAAAAGCAAAAAAGGTTGTAGTTGTTGGAGGTGGTTATATAGGAATGGAGGTTGCTGCTGCTGCTGTAGGTTGGAATCTTGATACCACGATCATATTTCCGGAAGATCAACTTTTGCAAAGACTGTTTACTCCATCTCTTTCCCGGAGATATGAAGAACTCTATAAAAAAAATGGAGTCAAAATCTTAAAGGGTTCCTCGATAAAACAATTGGAAGCTGGTTCAAATGGACATGTAGCTGGTCTGAAACTTGGAGACGGATCTATTTTGGAAGCAGATACGGTTATTATAGGCATTGGAGCAAAACCTGCTGTGAGCCCCTTTGAGAGGGTAGGCCTAAATACAGATGTTGGTGGTATACAGGTTGATGGTTTGTTCCGGACAAGCATTCCTGGAATCTTTGCTGTTGGTGATGTAGCAGCTTTCCCTTTAAAGATCTATGACCGTATCTCTCGAGTTGAACATGTAGATCATGCCCGTCGCTCTGCACAGCACTGTGTGAAAGCATTGCTCAGCGCGCAAACTCACACGTATGACTATCTTCCATACTTCTACTCGAGGGTTTTTGAATATGAAGGAAGCCCTAGGAAAGTATGGTGGCAGTTCTTTGGAGACAATGTTGGAGAAACAGTTGAAATTGGAAATTTTGATCCTAAAATAGCTACCTTCTGGATTGAATCTGGTAAGCTAAAAGGAGTTCTTCTTGAGAGTGGGAGTCCTGAGGAATTTCAACTCCTGCCTAAACTCGCCAGAAGTCAACCTCTGATTGATAAAGCCAGACTTCAAAACGCAAATTCAGTGGAGGAGGCACTAGAGATTGCTCGAACATCCTTGCAAGGCGAAGCCGCTGTCTAA 1566 0.4502 MPSPSGTYSTSIVRVFDCIALSLSLVTDFCFTARRLTMAAISNSFSLKHRFSLARPQTPFLAPAPPSSTYVKFRRCYASFANENSEYVIVGGGNSAGYAARTFVEHGMADGRLCIVTKEPFAPYERPALTKAYLFPPDKKPARLPGFHTCVGSGGERQTPEWYKENGIEMLYEDPVKDIDIEKQTLTTNTGKLLKYGSLIIATGCTASRFPEKIGGNLPGVHYIRNVADADALILSLEKAKKVVVVGGGYIGMEVAAAAVGWNLDTTIIFPEDQLLQRLFTPSLSRRYEELYKKNGVKILKGSSIKQLEAGSNGHVAGLKLGDGSILEADTVIIGIGAKPAVSPFERVGLNTDVGGIQVDGLFRTSIPGIFAVGDVAAFPLKIYDRISRVEHVDHARRSAQHCVKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEIGNFDPKIATFWIESGKLKGVLLESGSPEEFQLLPKLARSQPLIDKARLQNANSVEEALEIARTSLQGEAAV* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03616 521 Gene3D - 88 403 IPR036188 -
Lapu3g03616 521 Gene3D - 210 337 IPR036188 -
Lapu3g03616 521 PANTHER APOPTOSIS-INDUCING FACTOR 1 85 507 - -
Lapu3g03616 521 PRINTS FAD-dependent pyridine nucleotide reductase signature 196 214 - -
Lapu3g03616 521 PRINTS FAD-dependent pyridine nucleotide reductase signature 88 107 - -
Lapu3g03616 521 PRINTS FAD-dependent pyridine nucleotide reductase signature 242 260 - -
Lapu3g03616 521 PRINTS FAD-dependent pyridine nucleotide reductase signature 355 377 - -
Lapu3g03616 521 PRINTS FAD-dependent pyridine nucleotide reductase signature 329 345 - -
Lapu3g03616 521 Pfam Pyridine nucleotide-disulphide oxidoreductase 87 400 IPR023753 GO:0016491
Lapu3g03616 521 Gene3D - 420 507 IPR016156 GO:0016491|GO:0050660
Lapu3g03616 521 PRINTS Pyridine nucleotide disulphide reductase class-I signature 330 344 - -
Lapu3g03616 521 PRINTS Pyridine nucleotide disulphide reductase class-I signature 370 377 - -
Lapu3g03616 521 PRINTS Pyridine nucleotide disulphide reductase class-I signature 86 108 - -
Lapu3g03616 521 PRINTS Pyridine nucleotide disulphide reductase class-I signature 242 267 - -
Lapu3g03616 521 SUPERFAMILY FAD/NAD(P)-binding domain 85 428 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03616 Lapu-Chr3 59610114 59618708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03616 193 419 Acyl Lipid Metabolism Gene Families AT1G48030 27.386 2.39e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03616 K08232 - gmx:100819919 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03616 3 59610114 59618708 Lapu3g03616 3 59610114 59618708 ECH