Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03611 ATGGATGTGTTGTTGTTATTATGTGTTCTTTTGGTTGCTTTGCCAAACGTGGCTGTAGTGGAGAGCCGCAAGGCTCCGGTTCTGGACTACTTTGAGTATTGTGCTATGAGTTGCAGAGCTTATAGTGCCTCGTTGGAAGAATTTGGAGGTGTTGGTGATGGAACAACTTTGAACACCAGAGCCTTTCAGGCAGCCATAGATCATCTGAGTCAGTATGCATCAAGTGGAGGGGCTCAACTTTATGTTCCCCCAGGAAGATGGTTAACTGGCAGCTTCAATCTCACCAGCCATTTCACTTTATTCCTACACAAGGATGCTGTGATTCTTGCCTCTCAGGATGAAAACGACTGGCCTGTAATTGATCCCTTGCCATCTTACGGTAGAGGGAGGGACACCCAAGGTGGAAGGTTTAGCAGCCTAATTTTTGGGACCAACCTTACTGATGTAATCATAACTGGGGATAATGGCACATTGGATGGACAAGGTGATCTGTGGTGGCAAAAATTTCACAAGGGGGAGCTCAATTACACCCGGCCCTACCTGATTGAAATCATGTACTCAGATAATGTTCAGATATCCAATCTCACTTTGGTGAACTCTCCATCGTGGAATGTTCATCCTGTATACAGCAGCAACGTTGTTGTTCAAGGGATCACAATTCTTGCTCCTGTGACATCTCCAAATACAGATGGAATCAACCCTGACTCTTGCACAAACACAAGAATTGAAGACTGTTATATTGTGTCTGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATCAGTATGGTATAGCTTATGGAATGCCAACAAAGCAGCTTGTAATCAGAAGACTCACTTGTATTTCTCCATTCAGTGCTGTGATTGCTTTAGGGAGTGAAATGTCTGGCGGGATCCAAGATGTGAGGGCTGAGGACATTGTAGCCATAAATTCAGAATCAGGGGTTAGAATCAAAACTGCTGTAGGAAGAGGAGGATATGTTAAGGACATATATGTTAGAAGAATGACCATGAAAACCATGAAATGGGCATTTTGGATGACAGGAAATTACGGGTCTCATGCTGATGACAAATATGATCCTAATGCACTTCCTGTGATTCAGAACATAAACTATCGCGATATGGTTGCTGAGAATGTCACTATGGCTGCGAGGTTGGAGGGTATCTCTGGTGACCCTTTTACTGGAATCTGCATATCTAATGTAACCATTCAACTGGCAAAGAAGGCTAAAAAAGTTCCATGGACTTGCACTGATATTGATGGGATTTCAAGAGATGTCACTCCTGCACCATGTAATCTGTTGCCAGAACAAGAAGAGAAGATTGGAGCATGTACCTTCCCAGAAGAAAGTTTGCCCATCGAAGATATCCAGGTTCAAACGTGCACTTACAGTAGGAATTTATGA 1407 0.4371 MDVLLLLCVLLVALPNVAVVESRKAPVLDYFEYCAMSCRAYSASLEEFGGVGDGTTLNTRAFQAAIDHLSQYASSGGAQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGDNGTLDGQGDLWWQKFHKGELNYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPVYSSNVVVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHADDKYDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDIDGISRDVTPAPCNLLPEQEEKIGACTFPEESLPIEDIQVQTCTYSRNL* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03611 468 PANTHER PECTIN LYASE-RELATED 11 456 - -
Lapu3g03611 468 SUPERFAMILY Pectin lyase-like 35 437 IPR011050 -
Lapu3g03611 468 Gene3D - 33 426 IPR012334 -
Lapu3g03611 468 FunFam Glycoside hydrolase family 28 protein 29 426 - -
Lapu3g03611 468 Pfam Glycosyl hydrolases family 28 136 412 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03611 Lapu-Chr3 59567774 59570544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03611 31 466 Glycoside Hydrolase AT4G23500 75.973 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03611 - - gmx:100785841 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03611 3 59567774 59570544 Lapu3g03611 3 59567774 59570544 ECH