Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03594 ATGTGGTTTCTTGGTTGGAAAGGGGCATCGGGGTTCTCAGCCTCTTCCACAGCCGAACAAGTCACTCAAGGAATTGATGGAACCGATATCACTGCCATTGTCACAGGAGCATCAAGTGGTCTTGGTCTGGAGACCACCCGGGTTCTTGCATCCCGCGGTGTCCACGTTGTTATGGCAGTAAGGAATGTGGACAGTGGTAAGAATGTCAAAGAAACTATTCTTAAGGAAGTTCCCTCGGCTAAAATCGATGTTATGGAGTTAGATCTAAGCTCTATGGCATCGGTAAGGAAATTTGCAGCAGATTTTAACTCGTCTGGTCTTTCACTCAATATCCTAATTAACAATGCAGGGGTGATGGCAACTCCATTCATGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGGTCACTTTCTCTTGACAAACCTTTTATTAGAAACAATGAAAAAAACAGTACGAGAATGCAAACTGGAAGGAAGGATAGTTATTTTATCATCAGAGGCACACAGATTTGCATACAGTGAAGGAATTTTGTTCGATAAGATCAATGATGAATCAGGGTACAGCAGTTATTATGCTTATGGACAATCAAAACTTGCTAACATTTTGCATGCAAAGGAGCTTGCAAGGCGCTTGAAGGAAGAAGGAGTGGAAATAACTGTCAACTCCCTTCATCCTGGATCAATTGTTACAAATATTTTGCGATACCATGGTTATGTTAATGCTCTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAACGTGGAACAGGGAGCTGCAACTCAGTGTTACGTGGCATTGCATCCACAAGTCAAGGGAATATCTGGTGAATACTTTATGGATTGCAATAAGGCAGACCCAACCTCTCTGGCTAAAGATTCAGAGCTGGCAAAGAAACTATGGGAATTCAGCTCAAGTCTGACTAATCCAAAGTAG 948 0.4198 MWFLGWKGASGFSASSTAEQVTQGIDGTDITAIVTGASSGLGLETTRVLASRGVHVVMAVRNVDSGKNVKETILKEVPSAKIDVMELDLSSMASVRKFAADFNSSGLSLNILINNAGVMATPFMLSQDNIELQFATNHLGHFLLTNLLLETMKKTVRECKLEGRIVILSSEAHRFAYSEGILFDKINDESGYSSYYAYGQSKLANILHAKELARRLKEEGVEITVNSLHPGSIVTNILRYHGYVNALANMVGKYFLKNVEQGAATQCYVALHPQVKGISGEYFMDCNKADPTSLAKDSELAKKLWEFSSSLTNPK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03594 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Lapu3g03594 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Lapu3g03594 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Lapu3g03594 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Lapu3g03594 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Lapu3g03594 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 288 IPR036291 -
Lapu3g03594 315 Gene3D - 25 315 - -
Lapu3g03594 315 CDD retinol-DH_like_SDR_c_like 31 305 - -
Lapu3g03594 315 Pfam short chain dehydrogenase 31 177 IPR002347 -
Lapu3g03594 315 PANTHER RETINOL DEHYDROGENASE 10 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03594 Lapu-Chr3 59326540 59329696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03594 12 291 Acyl Lipid Metabolism Gene Families AT3G46170 25.424 1.04e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03594 - K19329 gmx:121174911 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03594 3 59326540 59329696 Lapu3g03594 3 59326540 59329696 ECH