Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03583 ATGACCGTCGTTTCGCGAACTCCCACCACCTACACCTGCCGTCACTTAACGCCTCGCCACTTCGCTAGCAAAACCAAAGCCTCTGCTCCCAACTCTTTCTCATGCTCTTCCTGGGATTCTGCTAAGAAGCCTCCTCCCCCGCAGAGGATTCTCTCACGTGGAGGTAGAGTGATTGTTGCTGCGAGTCCTCCCACTGAAGACGCTGTAGTTGCCACTGACCCACTCACCAAGCAGGATCTTGTGGATTATCTTGCCTCGGGTTGCAAGCCCAGGGAAAAATGGAGAATAGGTACTGAACACGAGAAGTTTGGTTTTGAGTTTGGAAGCTTGCGTCCTATGAAGTATGAGCAAATAGCAGAATTGCTGAATGGCATTGCCGAGAGATTTGACTGGGATAAAATAATGGAAGGTGATAAAATTATTGGACTCAAACAGGGAAAGCAGAGCATATCATTGGAGCCTGGTGGTCAGTTTGAACTTAGTGGAGCCCCTCTTGAAACTTTGCACCAGACTTGTGCTGAAGTTAATTCACACCTTTATCAGGTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGAATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTGTAATGCCAAAGGGAAGATATGATATTATGAGGAATTACATGCCTAAAGTTGGCTCTCTGGGGCTTGACATGATGTTCAGGACATGCACTGTACAGGTCAATCTGGACTTTAGTTCGGAAGCAGACATGATCAGGAAATTTCGTGCTGGCCTTGCTTTGCAGCCTATAGCAACGGCTCTTTTTGCGAATTCACCCTTTAAAGAGGGAAAGCCGAATGGTTTTGTCAGTATGAGAAGTCATATTTGGACCGATACTGACAAGGACCGCACAGGCATGCTGCCTTTTGTCTTTGACGATTCTTTTGGGTTTGAGCAGTATGTTGATTATGCTCTTGATGTTCCTATGTATTTTGTCTACCGGAAACATAGATATATCGATTGTACTGGAAAGACCTTCAGGGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCCGAGGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGACGGAGGGCCTTGGAGAAGGTTATGTGCATTACCAGCTCTTTGGGTAGGGTTATTGTACGACGAAGCTTCTCTACAAAGTATTTTGGATTTAACAGCTGATTGGACCCCAGAAGAAAGACAGATGTTAAGGAATAAGGTTCCCGTAAGTGGTCTGAAGACACCTTTCCGAGACGGTTTGCTGAAGCATGTTGCTGAAGATGTTCTACAGTTGGCAAAGGATGGCTTGGAGAGAAGAGGCTTCAAGGAATCAGGATTTTTAAATGAGGTTGCCGAGGTGGTTAGAACAGGTGTCACTCCAGCTGAGAGGCTTTTGGAATTGTATCATGGAAAATGGGAGCAATCCGTAGATCATGTGTTTGAGGAATTGCTTTATTAA 1527 0.4512 MTVVSRTPTTYTCRHLTPRHFASKTKASAPNSFSCSSWDSAKKPPPPQRILSRGGRVIVAASPPTEDAVVATDPLTKQDLVDYLASGCKPREKWRIGTEHEKFGFEFGSLRPMKYEQIAELLNGIAERFDWDKIMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGIKDIPVMPKGRYDIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFKEGKPNGFVSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKHRYIDCTGKTFRDFLAGRLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPALWVGLLYDEASLQSILDLTADWTPEERQMLRNKVPVSGLKTPFRDGLLKHVAEDVLQLAKDGLERRGFKESGFLNEVAEVVRTGVTPAERLLELYHGKWEQSVDHVFEELLY* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03583 508 NCBIfam glutamate--cysteine ligase 74 508 IPR011556 GO:0004357|GO:0006750
Lapu3g03583 508 PIRSF GCL 61 508 IPR035434 GO:0004357|GO:0006750
Lapu3g03583 508 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 51 508 IPR035434 GO:0004357|GO:0006750
Lapu3g03583 508 MobiDBLite consensus disorder prediction 24 51 - -
Lapu3g03583 508 Pfam Glutamate-cysteine ligase family 2(GCS2) 126 411 IPR006336 GO:0004357|GO:0042398
Lapu3g03583 508 MobiDBLite consensus disorder prediction 24 41 - -
Lapu3g03583 508 Gene3D - 60 508 - -
Lapu3g03583 508 SUPERFAMILY Glutamine synthetase/guanido kinase 86 506 IPR014746 GO:0003824
Lapu3g03583 508 FunFam Glutamate--cysteine ligase 60 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03583 Lapu-Chr3 59212333 59220480 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03583 K01919 - gmx:547545 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03583 3 59212333 59220480 Lapu3g03583 3 59212333 59220480 ECH