Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03558 ATGATTCGCACAATGCCCTTCTTCTTTGTAATTGCTCTATGCTTCACTTCTGCACATGCTGCAAGGTTTGACATCATAAACCGATGCTCTTACCCTGTGTGGGCCGCGGCTGTGCCTGGCGGCGGTAGGAGGCTAAACTCGGGCCAGTCATGGGCCTTGGACGTAGCCGCAGGAACCAAAGGGGCCCGCATTTGGGCCCGAACCGGATGCAGCTTCGACGGTTCGGGCCGCGGTCGATGCCAGACCGGAGACTGTGGCGGTCTCCTGGAGTGCAAAGCATACGGTACACCTCCCAACACCCTAGCGGAATACGCGCTGAACCAGTACAACAACTTGGACTTCTTCGACATCTCCCTGGTGGACGGTTTCAACGTTCCCATGGTGTTTAGTCCAACCTCCAATGGATGCTCACGTGGCATCTCATGCACTGCTGACATTAACGGACAGTGTCCCTCTCAGCTCAAGACTAAAGGCGGTTGCAACAACCCCTGCACCGTCTTCAAAACCAACGAATACTGTTGCAACTCCGGAGGTTGTTCTGCTACTCCTCTGTCCAAGTTCTTCAAGAATAGGTGCCCCGATGCTTATAGTTATCCCAAAGATGATGCAACCAGCACCTTCACTTGCAAGGGTGGCACCAATTATAGGGTTCTCTTTTGCCCTTGA 666 0.536 MIRTMPFFFVIALCFTSAHAARFDIINRCSYPVWAAAVPGGGRRLNSGQSWALDVAAGTKGARIWARTGCSFDGSGRGRCQTGDCGGLLECKAYGTPPNTLAEYALNQYNNLDFFDISLVDGFNVPMVFSPTSNGCSRGISCTADINGQCPSQLKTKGGCNNPCTVFKTNEYCCNSGGCSATPLSKFFKNRCPDAYSYPKDDATSTFTCKGGTNYRVLFCP* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03558 221 Gene3D Thaumatin 21 221 IPR037176 -
Lapu3g03558 221 Pfam Thaumatin family 27 221 IPR001938 -
Lapu3g03558 221 SUPERFAMILY Osmotin, thaumatin-like protein 21 221 IPR037176 -
Lapu3g03558 221 ProSiteProfiles Thaumatin family profile. 20 221 IPR001938 -
Lapu3g03558 221 ProSitePatterns Thaumatin family signature. 76 91 IPR017949 -
Lapu3g03558 221 CDD TLP-P 23 221 - -
Lapu3g03558 221 PRINTS Pathogenesis-related protein signature 41 50 IPR001938 -
Lapu3g03558 221 PRINTS Pathogenesis-related protein signature 63 74 IPR001938 -
Lapu3g03558 221 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Lapu3g03558 221 PRINTS Pathogenesis-related protein signature 113 129 IPR001938 -
Lapu3g03558 221 PRINTS Pathogenesis-related protein signature 211 220 IPR001938 -
Lapu3g03558 221 PRINTS Pathogenesis-related protein signature 76 105 IPR001938 -
Lapu3g03558 221 FunFam Thaumatin I 21 221 - -
Lapu3g03558 221 PANTHER OS03G0233200 PROTEIN 9 221 IPR001938 -
Lapu3g03558 221 PIRSF PR5 1 221 IPR001938 -
Lapu3g03558 221 SMART tha2 23 221 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03558 Lapu-Chr3 59026556 59027452 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03558 7 221 Receptor kinase-like Gene Family AT5G38280 36.777 7.87e-42 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03558 - - gmx:100301882 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03558 3 59026556 59027452 Lapu3g03558 3 59026556 59027452 ECH