Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03542 ATGGATGCAATTAACAAGCTACTCAACCTTGCATTGCCCCCACTGTCACTAATCCTCCTCTCCATTTTAATTCTACCTTCGCTCATACTCAAGCAGCTCATGCATGTAAGAAAATCACTGTGCAAAGAAAACGTCGCAAGCAAAGTTGTATTAATCACTGGAGCAGCCGCAGGAATTGGCGAGCAAATAGCATATGAATACGCAAGGCGAGGAGCAAAGCTTTCCCTGGTTGACATTAGAAAGGAGAAACTTGTAGCAGTGGCAGATCAGGCACGATCTCTGGGTTCTCCTGATGTTACCATCATTGGTGCTGATGTATCCAAAGTCCAAGACTGCAAACGCTTTGTTGATGAAACTGTCAACTACTTTGGAAGACTGGATCATCTGGTAAATAATGCGGGAATCAGTGGTAAGCCTGTAAGTGTGGAGAATTTGCGTGATGTTTCCGAATACAGTGCAGTTATGGATGTAAATTTTTGGGGACCAGTTAACGGGACATTACATGCAATCCCACATCTGAAAAGTAACAAAGGGAGGGTCATAGTGGTTGCTTCAGGTTGCGGATGGTTCCCACTGCCAAGGATAAGTATCTATAATGCGAGTAAAGCAGCAATAATAAACTTCTTTGAAACTCTGAGAATGGAAATTGGTAGTGCAATCAACATAACAATAGCCACACCTGGTCTCATCAAGACCGACCTTACATTGAGGGCCACCAAATATGATTTCAAGACTGCTATGGAAAGAATTCCAATGGGATCAGCTAGTGAATGTGCTAAAGCCATAGTTGAAAGTGCATGCAGGGGTGATATGTATGTTACAGATCCATCATGGGTAAAAGTGTTGTTTCCATGGAAGGTGCTTTATCCTCAATTCGTAGATTGGGCCTGCAACTTCGTCTGTGGGCCTTCTCCAAACAAGTCTGTCATAAAAGACAATCTCAATATGCCAGAGCATAAGGCAGAATGA 969 0.4303 MDAINKLLNLALPPLSLILLSILILPSLILKQLMHVRKSLCKENVASKVVLITGAAAGIGEQIAYEYARRGAKLSLVDIRKEKLVAVADQARSLGSPDVTIIGADVSKVQDCKRFVDETVNYFGRLDHLVNNAGISGKPVSVENLRDVSEYSAVMDVNFWGPVNGTLHAIPHLKSNKGRVIVVASGCGWFPLPRISIYNASKAAIINFFETLRMEIGSAINITIATPGLIKTDLTLRATKYDFKTAMERIPMGSASECAKAIVESACRGDMYVTDPSWVKVLFPWKVLYPQFVDWACNFVCGPSPNKSVIKDNLNMPEHKAE* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03542 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Lapu3g03542 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Lapu3g03542 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Lapu3g03542 322 PANTHER RETINOL DEHYDROGENASE-RELATED 46 301 - -
Lapu3g03542 322 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Lapu3g03542 322 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Lapu3g03542 322 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Lapu3g03542 322 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Lapu3g03542 322 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Lapu3g03542 322 Pfam short chain dehydrogenase 48 235 IPR002347 -
Lapu3g03542 322 Gene3D - 30 301 - -
Lapu3g03542 322 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491
Lapu3g03542 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 297 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03542 Lapu-Chr3 58832595 58835190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03542 43 253 Acyl Lipid Metabolism Gene Families AT1G24360 31.308 3.00e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03542 K22418 - gmx:100808990 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03542 3 58832595 58835190 Lapu3g03542 3 58832595 58835190 ECH