Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03517 ATGGCTAGGGTTTTGGCTCAGTCTATTGGTATGCCTGGCCTACTGAGTGGGCAGAGACATGGGCAGCATAAGGGATCAGGAAAATCAAGAAGATCCGTCAAGATGATGAGTAACTTACGAATGTCTGCGTCAAGAATTTCGAGTTTCTCTGGGCTGCGAACTCTGAACACTTTGGATCTTCTTTCGAGACCTCGACAAGGTTTTCCATCTAAGATGTTGACTTCAACTTCTTCCCGTCGTGAAAGGGCTAAAAGATGCGTACCTAAAGCGATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTAATTATGCTAGCCCAGGAGGAAGCTAGACGGCTGGGACATAATTTTGTTGGAACGGAACAAATTTTATTGGGTCTTATTGGTGAAGGCACTGGCATTGCTGCTAAGGTACTGAAGTCAATGGGAATTAACCTGAAGGATGCTCGTGTGGAAGTAGAAAAGATAATAGGAAGGGGTAGTGGATTTGTTGCAGTTGAGATTCCATTTACTCCCCGTGCAAAACGTGTTTTGGAACTCTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAACACTTGCTTCTTGGTCTTCTTCGAGAGGGCGAAGGTGTAGCAGCGCGCGTTCTTGAAAATTTGGGTGCTGATCCAAATAATATTCGTGCTCAGTTCTTGTATTCTCACTGGATGTTACAGGTTATCCGCATGGTTGGTGAGGGGGCTGACAGTGTTGGTGCTACTGTTGGCCCTGGAAGTAGTAACAACAATAAGATGCCGACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAAGAGGGAAAATTGGATCCTGTGGTGGGTAGGCAGCCACAAATTGAACGGGTCACTCAAATTTTGGGTCGTCGTACCAAAAATAATCCTTGTCTTATTGGAGAACCAGGGGTTGGGAAAACAGCTATTGCTGAAGGGCTTGCCCAAAGGATTGCAAATGGTGATGTTCCTGAAACCATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTATTGGTAGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAGAAATTAATGGAGGAAATCAAACAAAGTGACGAGATAATACTTTTTATTGATGAAGTACATACTCTAATTGGAGCCGGAGCAGCTGAGGGTGCAATTGATGCTGCAAACATACTAAAACCTGCTCTTGCGAGAGGTGAACTACAGTGTATAGGAGCCACAACGCTGGATGAATATAGGAAGCACATTGAAAAGGATCCCGCACTGGAGAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTAGATGAAACCATACAAATACTGAAAGGGCTTAGGGAACGCTATGAGATTCATCACAAGCTCCAATATACAGATGATGCACTTGTAGCTGCTGCCCAGTTGTCACACCAGTATATTAGTGATCGATTTTTGCCCGACAAAGCTATAGATTTAATTGATGAAGCAGGTTCCCGTGTTCGGCTTCAACATGCACAGTTACCTGAAGAAGCCAGAGAGCTTGACAAGGAGGTCAGACAGATTGTGAAGGATAAAGAAGAAGCTGTTCGCAATCAAGACTTTGAAAAGGCTGGAGAGTTACGAGATAAAGAAATGGATCTTAAAGCCCAGATATCCACACTTATAGAAAAAGGAAAGGAGATGAGCAAGGCAGAGAACGAGGCAGGAGATGGAGGTCCAATGGTGACCGAAGTAGACATTCAACATATCGTCTCCTCCTGGACTGGTATTCCAGTAGAGAAAGTCTCAACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACACACACGAGTGATAGGTCAGGATGAAGCAGTAAAAGCAATTAGCCGGGCCATCCGTCGAGCTAGGGTGGGATTGAAAAATCCTAATCGACCAATTGCCAGCTTCATATTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAATTAGCCAAAGCATTGGCTGCATACTATTTTGGTTCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGACACACAGTCTCCAAACTCATTGGTTCACCCCCTGGATATGTTGGTTACACCGAGGGTGGTCAACTGACTGAGGCAGTTCGACGGCGTCCCTATACTGTTGTACTATTTGATGAGATTGAGAAAGCCCATCCCGATGTATTCAATATGATGCTTCAGATCCTGGAAGATGGAAGACTAACAGACAGCAAGGGAAGAACTGTGGACTTCAAAAACACTCTTCTAATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGACGTAAAATTGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTACAATCGAATCAAGAGCCTGGTGACTGAGGAGCTGAAGCAATACTTCAGGCCAGAGTTCTTGAATAGGTTGGATGAAATGATTGTTTTCAGACAACTGACAAAACTGGAGGTAAAGGAGATAGCTGACATAATGTTGAAGGAGGTGTTTGAAAGACTGAAGGCCAAAGAGATTGATCTATCAGTGACAGAAAGATTTAGGGAGAGGGTGGTTGAAGAAGGATACAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCCATCATGCGACTTTTGGAGGACAGCATGGCCGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGTGACTCAGTCATAGTGGATGCTGATTCTGATGGTAACGTGATTGTGCTCAACGGTAGCAGTGGTGCCCCGGAATCACTAGCAGAAGCTCTTCCTTTGTAA 2799 0.4448 MARVLAQSIGMPGLLSGQRHGQHKGSGKSRRSVKMMSNLRMSASRISSFSGLRTLNTLDLLSRPRQGFPSKMLTSTSSRRERAKRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPNNIRAQFLYSHWMLQVIRMVGEGADSVGATVGPGSSNNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLQYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKDKEEAVRNQDFEKAGELRDKEMDLKAQISTLIEKGKEMSKAENEAGDGGPMVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKAKEIDLSVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGAPESLAEALPL* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03517 932 ProSiteProfiles UVR domain profile. 519 554 IPR001943 GO:0005515
Lapu3g03517 932 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 91 248 - -
Lapu3g03517 932 CDD RecA-like_ClpB_Hsp104-like 606 822 - -
Lapu3g03517 932 Pfam ATPase family associated with various cellular activities (AAA) 307 423 IPR003959 GO:0005524|GO:0016887
Lapu3g03517 932 ProSiteProfiles Clp repeat (R) domain profile. 92 243 IPR004176 -
Lapu3g03517 932 FunFam ATP-dependent Clp protease subunit 598 823 - -
Lapu3g03517 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 911 IPR027417 -
Lapu3g03517 932 Gene3D - 597 823 IPR027417 -
Lapu3g03517 932 PANTHER ATP-DEPENDENT CLP PROTEASE 96 912 - -
Lapu3g03517 932 Pfam AAA lid domain 445 547 IPR041546 -
Lapu3g03517 932 Gene3D - 825 922 - -
Lapu3g03517 932 SMART AAA_5 645 826 IPR003593 GO:0016887
Lapu3g03517 932 SMART AAA_5 302 442 IPR003593 GO:0016887
Lapu3g03517 932 SUPERFAMILY Double Clp-N motif 93 226 IPR036628 -
Lapu3g03517 932 Gene3D - 447 591 - -
Lapu3g03517 932 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Lapu3g03517 932 Pfam Clp amino terminal domain, pathogenicity island component 182 227 IPR004176 -
Lapu3g03517 932 Gene3D - 255 445 IPR027417 -
Lapu3g03517 932 FunFam ATP-dependent Clp protease ATP-binding subunit 446 531 - -
Lapu3g03517 932 Gene3D UVR domain 511 569 - -
Lapu3g03517 932 FunFam Chaperone clpB 1, putative 254 445 - -
Lapu3g03517 932 FunFam ATP-dependent chaperone ClpB 825 918 - -
Lapu3g03517 932 Gene3D - 91 232 IPR036628 -
Lapu3g03517 932 CDD AAA 285 437 - -
Lapu3g03517 932 Pfam C-terminal, D2-small domain, of ClpB protein 825 905 IPR019489 -
Lapu3g03517 932 Coils Coil 515 535 - -
Lapu3g03517 932 Pfam AAA domain (Cdc48 subfamily) 644 818 IPR003959 GO:0005524|GO:0016887
Lapu3g03517 932 ProSitePatterns Chaperonins clpA/B signature 2. 679 697 IPR028299 -
Lapu3g03517 932 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 756 770 IPR001270 GO:0005524
Lapu3g03517 932 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 723 741 IPR001270 GO:0005524
Lapu3g03517 932 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 694 712 IPR001270 GO:0005524
Lapu3g03517 932 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 649 667 IPR001270 GO:0005524
Lapu3g03517 932 SMART ClpB_D2_small_2 825 915 IPR019489 -
Lapu3g03517 932 ProSitePatterns Chaperonins clpA/B signature 1. 397 409 IPR018368 GO:0005524
Lapu3g03517 932 Coils Coil 356 376 - -
Lapu3g03517 932 MobiDBLite consensus disorder prediction 9 33 - -
Lapu3g03517 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 544 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03517 Lapu-Chr3 58566560 58572506 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03517 K03696 - gmx:100814891 1680.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03517 3 58566560 58572506 Lapu9g00923 9 14043718 14051237 PCT