Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03506 ATGCAAGGAATGGAAACAATGAACGCTAGGGTTAGGGAAGAGGTTAGACGGGAAGTGGGTGTAGAAGATGATAGCACTCAGACTGAACTCACCAAAATTCGTCTCCTTAGGTCAATTCTTGAATCACGGGATCCCTCTTCTAAGGAAGAAGATGATTTTATGATCAGAAGATTCCTACGTGCTCGTGATTTAGATGTGGAGAAGGCTTGTACAATGTTCCTCAAGTACTTGAAATGGAAACATTCATTTGTTCCAAATGGTTCTGTATCTGCATCAGATGTTCCCAATGAACTGGCTCAAAACAAGGCCTTCATACAAGGACATGACAAGATAGGTCGACCTATACTTATTGTCTTCGGTAGAAAACATTTTCAGAACAAAGATGGTGGTCTAGATGAATTCAAACGGTTTGTGGTCTACGTCTTTGATAAAATATGTGCAAGTATGCCACCTGGGCAAGAAAAGTTTGTTGGTATAGCTGAACTTAAGGGATGGGGATACTCAAACAGTGACATCCGTGGATACCTTAGTGCTCTATCAATTTTGCAGGATTACTACCCGGAAAGATTGGGGAAGTTGTTTATTGTGAATGCACCATACATATTTATGAAAGTGTGGCAAATTATTTACCCTTTCATTGACAACAAAACCAAGAAGAAGATACAATTTGTGGATAAAAATAAGGTGAAATCAGCACTACTAGAAGACATAGATGAAAGTAATATACCAGAGATATTCGGTGGGCCACTACCATTAGTCCCAATTCAGGATAACTAA 777 0.3925 MQGMETMNARVREEVRREVGVEDDSTQTELTKIRLLRSILESRDPSSKEEDDFMIRRFLRARDLDVEKACTMFLKYLKWKHSFVPNGSVSASDVPNELAQNKAFIQGHDKIGRPILIVFGRKHFQNKDGGLDEFKRFVVYVFDKICASMPPGQEKFVGIAELKGWGYSNSDIRGYLSALSILQDYYPERLGKLFIVNAPYIFMKVWQIIYPFIDNKTKKKIQFVDKNKVKSALLEDIDESNIPEIFGGPLPLVPIQDN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03506 258 SUPERFAMILY CRAL/TRIO domain 93 251 IPR036865 -
Lapu3g03506 258 CDD SEC14 104 248 IPR001251 -
Lapu3g03506 258 PANTHER OS03G0850700 PROTEIN 23 257 - -
Lapu3g03506 258 SMART sec14_4 97 251 IPR001251 -
Lapu3g03506 258 Gene3D - 19 255 IPR036865 -
Lapu3g03506 258 SUPERFAMILY CRAL/TRIO N-terminal domain 23 86 IPR036273 -
Lapu3g03506 258 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 91 254 IPR001251 -
Lapu3g03506 258 SMART CRAL_TRIO_N_2 51 76 IPR011074 -
Lapu3g03506 258 Pfam CRAL/TRIO, N-terminal domain 49 74 IPR011074 -
Lapu3g03506 258 Pfam CRAL/TRIO domain 101 248 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03506 Lapu-Chr3 58391918 58403346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03506 57 244 Acyl Lipid Metabolism Gene Families AT1G55840 26.047 7.84e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03506 - - gmx:548015 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03506 3 58391918 58403346 Lapu3g03506 3 58391918 58403346 ECH
Lapu3g03506 3 58391918 58403346 Lapu9g00910 9 13642925 13646063 PCT