Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03496 ATGGGAGAAAGGAAGCCAATCCCTCTGGGGATCTTTGCAGTGCTCCTCTTGATTTCTGCCTCTTCTTTTCAGCTTCTCCGCGCTTCTGACGAGGCTGATGATGCGATCTTTTACGAGTCATTCGATGAGGATTTTGAAGACCGGTGGATCGTGTCTCAGAAAGACGAATACAGTGGTGTCTGGAAGCATGCCAAGAGTGAGGGACATGAGGATTATGGTCTTCTTGTCAGTGAGAAAGCAAGGAAATATGCTATAGTGAAGGAACTTGACGAGGCAGTGAGTCTCAAGGAGGGAACTGTTGTTCTCCAGTTTGAAACTCGGCTTCAGAATGGCCTTGAATGTGGCGGAGCATATCTAAAGTATCTCCGACCACAGGATGCTGGATGGAAATCTAAGGAATTTGACAACGAATCTCCGTATTCTATCATGTTTGGTCCTGATAAGTGTGGTGCCACAAACAAAGTACACTTTATTTTCAAACACAAGAATCCCAAGAGCGGGGAGTATGTTGAACACCATCTTAAGCACCCCCCTTCAGTCCCTTCTGATAAATTATCTCATGTGTACACGGCTATTCTGAAGCCTGACAATGAGGTGCAAATTTTGATTGATGGGGAACAGAAGAAGAAGGCAAACTTCTTAAGTGCTGACGATTTTGAACCTCCTCTTATCCCTCCCAAGACAATCCCAGATCCCGATGATGAGAAGCCTGAGGACTGGGATGAGAGAGAGAAGATTCCAGACCCAAGTGCAGTAAACATGGGAGAACGGAAGCAAATCCCTCTCGGGATCTTTGCGGTGCTTTTCTTGATCTCTACCTTTTCTTTTCAGCTTCTCCAAGCTTCTGACGACGTGGATGCGATCTTCTATGAGTCATTCGATGAGGATTTTTCAGACCGTTGGATCGTGTCTCAGAAAGAGGAATACAGTGGTGTCTGGAAACATGCCAAGAGTGAGGGACATGAGGATTATGGTCTTCTTGTCAGTGAGAAAGCCAGGAAATATGCTATAGTGAAGGAACTTGACGAGGCAGTGAGTCTCAAGGAGGGAACTGTTGTTCTCCAGTTTGAAACTCGGCTTCAGAGTGGCCTTGAATGTGGCGGAGCATATCTAAAGTATCTCCGACCACAGGATGCTGGATGGAAATCTAAGGAATTTGACAACGAATCTCCGTATTCTATCATGTTTGGTCCTGATAAGTGTGGTGCCACAAACAAAGTACACTTTATTTTCAAACACAAGAATCCCAAGAGCGGGGAGTATGTTGAACACCATCTTAAGCACCCTCCTTCAGTCCCTTCTGATAAATTATCTCATGTGTACACGGCTATTCTGAAGCCTGACAATGAGGTGCAAATTTTGATTGATGGGGAACAGAAGAAGAAGGCAAACTTCTTAAGTGCTGACGATTTTGAACCTCCTCTTATCCCTCCCAAGACAATCCCAGATCCCGATGATAAGAAGCCTGAGGACTGGGATGAGAGAGAGAAGATTCCAGACGCAAGTGCAGTAAAGCCAGATGACTGGGATGAGGATGCACCCTTGGAAATCGTTGATGAAGAAGCTGAAAAACCTGAAGGATGGTTAGACGATGAACCTGAGGAGATAGATGATCCAGAGGCAACAAAACCAGAAGATTGGGACGATGAGGAGGATGGTGAATGGGAAGCCCCAAAGATTGAGAACCCAAAATGTGAAGCCGCCCCAGGCTGTGGTGAGTGGAAGAGGCCAATGAAGAGGAATCCATCTTACAAAGGAAAATGGCATGCCCCACTTATTGAAAATCCTGCTTACAAGGGTATATGGAAGCCTAGGGATATTCCAAACCCTGCTTACTTCGAACTTAAAAAACCTGATTTTGAGCCAATCGCTGCTATTGGTATTGAGATTTGGACAATGCAAGAGGGCATTTTGTTTGACAACATCTTGATAGCTAAAGATGATAAAATTGCCGAGTCCTATCGGGAGACTACATGGAAACCCAAGTTTTCAGTTGAGAAAGAAAAGCAGAAGGAAGAGGAGGAATCGGAAGGTGGATCAAGTGGTCTTGCAGGCTTCCAGAAGAAGGTATTTGATCTCTTGTACAAGATCGCAGACATTCCCTTCCTGAGTGCCTATAAGGCTAAAATCCATGATCTCATTGAGAAGGGTCAAGAGCAACCCAATCTCACTGTTGGAGTTCTTGTAGCCATTTTGGTTGTCTTCGTGTCAATTTTCTTCAGGATCTTGTTTGGTGGGAAGAAGAAGCCCACGAAGGTGGAGAAGACAAACTTGGTACCCGCAGAAAGTGCCTCCAATCAAAGAAATGGTGAAAACGAAGAAAACAATGACAAGGAGGAGTCCTCTGCCCCTCCACGTCGGAGGTCAACAAGGAGAGAGAATTGA 2385 0.4524 MGERKPIPLGIFAVLLLISASSFQLLRASDEADDAIFYESFDEDFEDRWIVSQKDEYSGVWKHAKSEGHEDYGLLVSEKARKYAIVKELDEAVSLKEGTVVLQFETRLQNGLECGGAYLKYLRPQDAGWKSKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKHPPSVPSDKLSHVYTAILKPDNEVQILIDGEQKKKANFLSADDFEPPLIPPKTIPDPDDEKPEDWDEREKIPDPSAVNMGERKQIPLGIFAVLFLISTFSFQLLQASDDVDAIFYESFDEDFSDRWIVSQKEEYSGVWKHAKSEGHEDYGLLVSEKARKYAIVKELDEAVSLKEGTVVLQFETRLQSGLECGGAYLKYLRPQDAGWKSKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKHPPSVPSDKLSHVYTAILKPDNEVQILIDGEQKKKANFLSADDFEPPLIPPKTIPDPDDKKPEDWDEREKIPDASAVKPDDWDEDAPLEIVDEEAEKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPKIENPKCEAAPGCGEWKRPMKRNPSYKGKWHAPLIENPAYKGIWKPRDIPNPAYFELKKPDFEPIAAIGIEIWTMQEGILFDNILIAKDDKIAESYRETTWKPKFSVEKEKQKEEEESEGGSSGLAGFQKKVFDLLYKIADIPFLSAYKAKIHDLIEKGQEQPNLTVGVLVAILVVFVSIFFRILFGGKKKPTKVEKTNLVPAESASNQRNGENEENNDKEESSAPPRRRSTRREN* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03496 794 SUPERFAMILY Concanavalin A-like lectins/glucanases 285 495 IPR013320 -
Lapu3g03496 794 MobiDBLite consensus disorder prediction 753 794 - -
Lapu3g03496 794 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 221 IPR013320 -
Lapu3g03496 794 Gene3D - 289 654 - -
Lapu3g03496 794 FunFam Calnexin homolog 37 217 - -
Lapu3g03496 794 Coils Coil 761 781 - -
Lapu3g03496 794 MobiDBLite consensus disorder prediction 512 556 - -
Lapu3g03496 794 ProSitePatterns Calreticulin family signature 2. 142 150 IPR018124 GO:0005509
Lapu3g03496 794 Pfam Calreticulin family 289 644 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lapu3g03496 794 Pfam Calreticulin family 37 253 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lapu3g03496 794 FunFam Calnexin homolog 289 469 - -
Lapu3g03496 794 MobiDBLite consensus disorder prediction 466 556 - -
Lapu3g03496 794 ProSitePatterns Calreticulin family signature 1. 107 122 IPR018124 GO:0005509
Lapu3g03496 794 ProSitePatterns Calreticulin family signature 2. 394 402 IPR018124 GO:0005509
Lapu3g03496 794 SUPERFAMILY P-domain of calnexin/calreticulin 474 614 IPR009033 GO:0005509|GO:0005515
Lapu3g03496 794 PRINTS Calreticulin signature 488 501 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lapu3g03496 794 PRINTS Calreticulin signature 536 558 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lapu3g03496 794 PRINTS Calreticulin signature 593 612 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lapu3g03496 794 PRINTS Calreticulin signature 625 645 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lapu3g03496 794 PRINTS Calreticulin signature 361 379 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lapu3g03496 794 PRINTS Calreticulin signature 390 406 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lapu3g03496 794 MobiDBLite consensus disorder prediction 481 511 - -
Lapu3g03496 794 SUPERFAMILY P-domain of calnexin/calreticulin 222 254 IPR009033 GO:0005509|GO:0005515
Lapu3g03496 794 PANTHER CALRETICULIN AND CALNEXIN 268 532 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lapu3g03496 794 MobiDBLite consensus disorder prediction 217 251 - -
Lapu3g03496 794 ProSitePatterns Calreticulin family repeated motif signature. 536 548 IPR018124 GO:0005509
Lapu3g03496 794 MobiDBLite consensus disorder prediction 229 251 - -
Lapu3g03496 794 ProSitePatterns Calreticulin family repeated motif signature. 229 241 IPR018124 GO:0005509
Lapu3g03496 794 Gene3D - 27 226 - -
Lapu3g03496 794 FunFam Calnexin homolog 474 619 - -
Lapu3g03496 794 MobiDBLite consensus disorder prediction 771 794 - -
Lapu3g03496 794 Gene3D Calreticulin/calnexin, P domain 227 260 IPR009033 GO:0005509|GO:0005515
Lapu3g03496 794 Gene3D Calreticulin/calnexin, P domain 474 618 IPR009033 GO:0005509|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03496 Lapu-Chr3 58326633 58337535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03496 264 794 Miscellaneous Gene Families AT5G61790 75.000 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03496 K08054 - gmx:100810595 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03496 3 58326633 58337535 Lapu3g03496 3 58326633 58337535 ECH