Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03446 ATGGGAAATCAAGAGTCAACCCATGATTCTCATACCAGTTCTTTCCAGCAAACCCCTTCCTTCGATGGAAGTTCACCAAATGCTATCCATCAATATCATCACCCCCCTTCCTACGACGGAAGTTCAGTGAATACTAGCCATCAACATCATCAACCGGTTCAACCCTCTTCATATGCTGGGAGTTCGGTGAATACCAGACATCAACATAAGCAGCAACCCACATATATAGCTGACAATTTCAGTTCATTGGATCAGGTTGTTTCTGCTTTGAGAGAAGCTGGTTTGGAATCTTCAAATCTTATAATTGGTATTGACTTCACCAAAAGCAATGAGTGGACAGGCAAGCATTCTTTCAACCACAAAAGCCTTCATTATATTGGAAACACTCCTAATCCATATGAGCAAGCGATCTCTATTATTGGCCGTACTCTCTCTTCGTTTGATGAAGACAACCTGATACCATGTTTTGGATTTGGTGATGCATCTACACATGATCAGAATGTGTTCAGCTTTTATCCTGACAATCGCTATTGTCACGGTTTTGAAGAAGTACTTGCACGCTACCGAGAGATTGTGCCACACTTAAAATTGTCAGGTCCGACATCATTTGCCCCTGTAATTGATGCAGCAGTTGATATTGTGGAAAGAAGCAATGGTCAATACCATGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATTCAGGTACACCACATGGAAAGTTTAGTCCACAAGAGCAAGCAACTATTAATTCTATCATTGCTGCAAGTCACCATCCCCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGATGAAATGCAGCAGTTCGATGATAGCATTACTCAGCGCTTATTTGACAACTTTCAGTTTGTGAATTTCACAAAGATCATGTCCGAGAACAAAGATGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGGATAACCCAAAACCTACAAGTTGCCAATGAAAATTCAATTAGCTATCAACGTAAAAGGCCTTTTCCTCCGCCTAAGGAAGTAATAGATCGTGACAATGCAGTTCTAGCAGTTCCAAAATTTGAATCAGTTGAACCATCAGCTCCAGCTACGGTAGAATCAGCATGCCCTGTTTGTTTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTCATACAACTTGCAAGGAGTGTGGCGTGACATTATCTTCATGCCCTATGTGCCGGCAGCCAATTACAACTCGCCTGAGACTATACACTTGA 1281 0.4184 MGNQESTHDSHTSSFQQTPSFDGSSPNAIHQYHHPPSYDGSSVNTSHQHHQPVQPSSYAGSSVNTRHQHKQQPTYIADNFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKHSFNHKSLHYIGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFSFYPDNRYCHGFEEVLARYREIVPHLKLSGPTSFAPVIDAAVDIVERSNGQYHVLVIIADGQVTRNSGTPHGKFSPQEQATINSIIAASHHPLSIILVGVGDGPWDEMQQFDDSITQRLFDNFQFVNFTKIMSENKDASKKEAAFALAALMEIPIQYRITQNLQVANENSISYQRKRPFPPPKEVIDRDNAVLAVPKFESVEPSAPATVESACPVCLTNPKDMAFGCGHTTCKECGVTLSSCPMCRQPITTRLRLYT* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03446 426 ProSiteProfiles Zinc finger RING-type profile. 382 415 IPR001841 -
Lapu3g03446 426 SUPERFAMILY vWA-like 98 281 IPR036465 -
Lapu3g03446 426 SMART VWA_4 97 300 IPR002035 -
Lapu3g03446 426 Pfam Copine 122 333 IPR010734 -
Lapu3g03446 426 Pfam Zinc finger, C3HC4 type (RING finger) 379 420 - -
Lapu3g03446 426 SMART ring_2 382 414 IPR001841 -
Lapu3g03446 426 Gene3D von Willebrand factor, type A domain 114 303 IPR036465 -
Lapu3g03446 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 426 IPR013083 -
Lapu3g03446 426 MobiDBLite consensus disorder prediction 1 76 - -
Lapu3g03446 426 PANTHER COPINE FAMILY PROTEIN 1 41 403 - -
Lapu3g03446 426 CDD vWA_copine_like 76 326 IPR010734 -
Lapu3g03446 426 SUPERFAMILY RING/U-box 381 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03446 Lapu-Chr3 57727998 57736836 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03446 K16280 - gmx:100791316 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03446 3 57727998 57736836 Lapu3g03446 3 57727998 57736836 ECH