Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03435 ATGGATTCGACTTCGGGGCCTCAAGAATTTGATTATTTGTTCAAGTTGTTGATGATTGGAGACTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCAGTTTCACCACTGATGCTTTTGAAGATCTTTCCCCCACTATTGGTGTTGATTTTAAGGTCAAATATGTGACGATGGGGGGTAAAAAGCTTAAGCTTGCAATTTGGGATACTGCTGGTCAGGAGAGATTCAGAACACTGACAAGTTCTTACTACCGAGGGGCCCAAGGAATCATCATGGTATATGATGTAACCCGGCGAGATACATTTACAAATCTCTCTGATATATGGGCAAAGGAGATAGACCTTTATTCAACAAATCAAGATTGCATCAAAATGCTTGTTGGAAACAAAGTCGACAAGGAGGGTGATAGAGTTGTAACAAAGAAAGAGGGAATAGATTTCGCCAGGGAATATGGTTGCCTTTTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTTCAGCAATGCTTTGAAGAGCTTGTTTTGAAGATTCTGGATACACCTAGCCTCTTAGCCGATGGCTCAAAGGGTGTACGAAAGAACATTTTTAAGGACAGGCCACCCCAATCTGATGCATCTACAAGTGCAATTATTGATAAATTTCAACATGGCTCTTCTTCTTCATATGCTGCCACAATGTATGATCCTCTAAGTGTTGCTGAAAGAGAAGCAAGTGCTCTAATTTCACAGAGAGTGTCTCAAGCAGTGGATTTGTTGGAGAAAGGGAGGGAATTGCAGGCTCAGGGTGACTTTACTGGGGCTCTTGGTTACTTTTCTCAGGTTGTTGAAAGCTACAAAGACTTGGCATTCTCAGAGTATGCAAGGGTAGGAAGAGCATTGGCCCTGTATGAAGTTGGTGACAGAGAAGAAGCAATTGCAGAGATGGAGGATGTTTCAATATCTCTAAAAGGATATCCAGAAATACATGCAGCTCTTGCAGCAGCCTTATATGCAGATAAGCACGCCGCTTTGCTTGCTGAAAACCAGTTTGCCATTGCAACTCTTCTTGATCCCCATTTTACAGACCTTTCATATGTTAGAGACACAAAGCACTGGCCTCCAAGTTTGATCAGTTCTCTGCAGCACTTCATCACACTGTCTTAA 1137 0.4222 MDSTSGPQEFDYLFKLLMIGDSGVGKSSLLLSFTTDAFEDLSPTIGVDFKVKYVTMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLADGSKGVRKNIFKDRPPQSDASTSAIIDKFQHGSSSSYAATMYDPLSVAEREASALISQRVSQAVDLLEKGRELQAQGDFTGALGYFSQVVESYKDLAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEIHAALAAALYADKHAALLAENQFAIATLLDPHFTDLSYVRDTKHWPPSLISSLQHFITLS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03435 378 ProSiteProfiles small GTPase Ras family profile. 9 209 IPR001806 GO:0003924|GO:0005525
Lapu3g03435 378 SMART arf_sub_2 1 179 - -
Lapu3g03435 378 FunFam Ras-related protein RABC1 7 209 - -
Lapu3g03435 378 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Lapu3g03435 378 SUPERFAMILY TPR-like 238 353 IPR011990 GO:0005515
Lapu3g03435 378 PRINTS Transforming protein P21 ras signature 153 175 - -
Lapu3g03435 378 PRINTS Transforming protein P21 ras signature 36 52 - -
Lapu3g03435 378 PRINTS Transforming protein P21 ras signature 54 76 - -
Lapu3g03435 378 PRINTS Transforming protein P21 ras signature 118 131 - -
Lapu3g03435 378 PRINTS Transforming protein P21 ras signature 14 35 - -
Lapu3g03435 378 ProSiteProfiles small GTPase Rab1 family profile. 9 219 - -
Lapu3g03435 378 NCBIfam small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Lapu3g03435 378 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Lapu3g03435 378 SMART ran_sub_2 19 228 - -
Lapu3g03435 378 Gene3D - 7 195 IPR027417 -
Lapu3g03435 378 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
Lapu3g03435 378 PANTHER EXPRESSED PROTEIN 212 378 - -
Lapu3g03435 378 Gene3D Tetratricopeptide repeat domain 236 358 IPR011990 GO:0005515
Lapu3g03435 378 SMART ras_sub_4 11 178 - -
Lapu3g03435 378 SMART rab_sub_5 14 178 - -
Lapu3g03435 378 CDD Rab18 14 175 - -
Lapu3g03435 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03435 Lapu-Chr3 57617163 57625091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03435 15 168 EF-hand Containing Proteins AT5G27540 25.625 3.34e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03435 K07910 - pda:103720531 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03435 3 57617163 57625091 Lapu3g03435 3 57617163 57625091 ECH