Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03427 ATGAAGGGTGGCACTGTTCAGATTATCTGGCACGAGAACAAACCCGTCTTAACCCTCGATTTTCATCCTCCCTCCGCCACTCTTGCCACCGCGGGTGCCGATTTTGACATCAAGTTTTGGTCTATAAGTCCCGCGGGGACGCATAAGCTTCCTGTAGCTTCCTATCTCAGTAACCTCTCATACCATAGCTCTGCAGTGAATGTTGTCCGCTTCTCTTCTTCCGGGGAATTGCTGGCCTCTGGTGCCGATGGGGGGGACCTGATAATATGGAAGCTGCATTCTGCCGATACTGGTCAGACATGGAAGGTTCTCAAGATGTTACGATCTCATCTCAAGGACATTCTGGACCTGCAGTGGTCTACCGATGGCACTTATATCATATCTGGATCTGTTGATAATTCTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATGCCCATGCGCACTATGTTCAGGGGGTTGCGTGGGACCCTCTAGGAAAATATGTTTCTTCTCTTAGTTCTGATCGGACTTGCAGAATTTTCATGAATAAGCCTCATAAATCAAAGGGCACTGAGAAAATCAATTATGTTTGCCAGCAAGTCATTTCCAAGGCAGATCAGCCATTAATAAAAAATTCTGAGGGGACAAAATTTCACCTCTTCCACGACGAGACGTTGCCATCTTTTTTCAGAAGATTAGCATGGTCTCCTGATGGTTCATTTTTACTTGTGCCTGCAGGCTCTTACAAAATTAATACTTCATCCGAGTCTGTGAATGCGGCTTACATATTTTCTAGAAAAGATCTTTCTAGGCCTGCTATACAGCTCCCCTGTGCAAGTAAAGCTGTCATAGCTGTTCGATTCTGTCCCATAGTTTTTAAACTTCAGGGAACTCACTCACTCAACTCAGCTGGGGTATTCAAGCTCCCATATCGCATCATATTTGCTGTGGCCACTTTGAATTCTCTGTACATTTATGACACCGAGAGCACATCTCCGCTAGCTGTATTAGCTGGTCTTCACTACGCCGCAATAACAGACATTGCTTGGTCATCTGATGCTCATTATTTGGCATTGTCATCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGACGAACTTGGTTCACCCTACACTGGAGCGTCTGGGAATATAGGTGCTGCTTTAACAGAAAACAAGAGCGCTGTAACACAAGAGAAGCCTGACAACATGATCATTGAGGCAACTGGGAATGTTGAAGGGGTTATAGCTGATAGTAGGAAAAATGAAGCAGAAGATAGAACTGATGACATGGTCGTTGAAACAACCGGAAGAATTGGTACTGCTGAATTGGATAGAAGAATAGCGGAACCAGAAGATAAGGCAGCCAAACAGCTATGGCATTCGGGTATTGTAAATTTTGGAGCTCAAGACAAGGCCGAGAATCAGCTAGCTAATCCATATTCGGATGGAAAACAAACAGAATCAAGTGAGAAGACAGCAAATCTGCAATCAAGTTTGGACAGTATTAAATCGGAGGCAGAAGAAAAGGTTGGACAACAATTGTCCAGTTCGAAGAGTACACCCTTATCAAAAAAGCCAGCCAAGAAGCGTATTACTCCTATTGCCATTGATCCATGA 1623 0.4399 MKGGTVQIIWHENKPVLTLDFHPPSATLATAGADFDIKFWSISPAGTHKLPVASYLSNLSYHSSAVNVVRFSSSGELLASGADGGDLIIWKLHSADTGQTWKVLKMLRSHLKDILDLQWSTDGTYIISGSVDNSCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVSSLSSDRTCRIFMNKPHKSKGTEKINYVCQQVISKADQPLIKNSEGTKFHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKINTSSESVNAAYIFSRKDLSRPAIQLPCASKAVIAVRFCPIVFKLQGTHSLNSAGVFKLPYRIIFAVATLNSLYIYDTESTSPLAVLAGLHYAAITDIAWSSDAHYLALSSQDGFCSLVEFENDELGSPYTGASGNIGAALTENKSAVTQEKPDNMIIEATGNVEGVIADSRKNEAEDRTDDMVVETTGRIGTAELDRRIAEPEDKAAKQLWHSGIVNFGAQDKAENQLANPYSDGKQTESSEKTANLQSSLDSIKSEAEEKVGQQLSSSKSTPLSKKPAKKRITPIAIDP* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03427 540 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 540 IPR045145 GO:0006335
Lapu3g03427 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Lapu3g03427 540 SMART WD40_4 142 181 IPR001680 GO:0005515
Lapu3g03427 540 SMART WD40_4 2 41 IPR001680 GO:0005515
Lapu3g03427 540 SMART WD40_4 100 139 IPR001680 GO:0005515
Lapu3g03427 540 SMART WD40_4 329 369 IPR001680 GO:0005515
Lapu3g03427 540 SMART WD40_4 52 91 IPR001680 GO:0005515
Lapu3g03427 540 Gene3D - 227 401 IPR015943 GO:0005515
Lapu3g03427 540 MobiDBLite consensus disorder prediction 478 503 - -
Lapu3g03427 540 SUPERFAMILY WD40 repeat-like 12 406 IPR036322 GO:0005515
Lapu3g03427 540 PRINTS Beta G protein (transducin) signature 163 180 IPR001632 -
Lapu3g03427 540 PRINTS Beta G protein (transducin) signature 126 140 IPR001632 -
Lapu3g03427 540 PRINTS Beta G protein (transducin) signature 107 123 IPR001632 -
Lapu3g03427 540 MobiDBLite consensus disorder prediction 478 540 - -
Lapu3g03427 540 MobiDBLite consensus disorder prediction 510 524 - -
Lapu3g03427 540 ProSitePatterns Trp-Asp (WD) repeats signature. 126 140 IPR019775 -
Lapu3g03427 540 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 94 - -
Lapu3g03427 540 Pfam WD domain, G-beta repeat 102 139 IPR001680 GO:0005515
Lapu3g03427 540 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Lapu3g03427 540 Pfam WD domain, G-beta repeat 143 180 IPR001680 GO:0005515
Lapu3g03427 540 Pfam WD domain, G-beta repeat 58 91 IPR001680 GO:0005515
Lapu3g03427 540 FunFam Chromatin assembly factor 1 subunit FAS2 4 249 - -
Lapu3g03427 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 9 43 IPR001680 GO:0005515
Lapu3g03427 540 Gene3D - 3 212 IPR015943 GO:0005515
Lapu3g03427 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 148 IPR001680 GO:0005515
Lapu3g03427 540 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 107 143 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03427 18 197 Miscellaneous Gene Families AT5G08390 25.683 9.11e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03427 K10751 - gmx:100784411 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03427 3 57510399 57514451 Lapu3g03427 3 57510399 57514451 ECH