Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03416 ATGGACGCGGAGCTGAAGTCGGCGAAAGCGGCTTTCCGGAACGCAGAAGCTGAGGGAAACCGCCGGGAGGAGGCGCGGTGGGCCAACGTCATCGGCGACATACTGAAAAACCGAGGAGAGTACGTGGCAGCCCTCAAATGGCTCCGAATAGATTACGAAATTTCGCTCAAACATTTACCGGAGAAGCAGTTGCTCCCAACCTGCCAATCCCTCGGCGAAATGTACCTCCGCCTCGAAGAGTTCCCCAACGCCCTAATTTACCAGAAAAAGCACTTAGAGCTCGCGAGGGACGCAAACGACGTCGTCGAGCAGCAGCGGGCGAGCACGCAACTCGGTCGCACTTACCACGAACTGTTCTCGCGATCGGATCACGACCACAACTCGATTCGCAACGCGAAGAAGTACTTCAAGTGCGCGATGGATCTCGCGGTGAAGCTCAAGGAGAATCCTCCGAACAGCAAGTCTTCTTTTCTCAAGGAGTACATCGACGCGCACAACAACATAGGCATGCTTGAAATGGATCTTGAAAACTTGTATGAGGCGCGGAAAATTTTAACTACTGGATTGGAGATTTGTGATGAAGAGGAGGTCGCCGAATTCGATGATAGCCGCAGTAGGCTCCATCACAACCTTGGGAATGTGTATATGGAACTTAGGCTTTGGGATGAAGCTAGGAAAAACATCAAGAGGGATATTGTGATTTGTAACAGAATTGGACACTGTCAAGGGGAGGCCAAAGGGTATATTAATCTTGGTGAAATGCATTACAGGACTCAGAGGTACGAAGATGCAAGGGCTTATTACGAGAAGGCGCTTGGTTTGGCGAAGTCCTTGGAGGATGAAGATGCTTTGGTAAGACAAATTGAGCAGAATATTGAAACTGTGCGAGAAGCCGTTAAGGTAATGGCTGATATAACGAAGGAAGAGCAAAGCCTTAAAAAGCTTAAAAGAGATGTAGTCGCGGCTAGAGGGACATCGCATGAGCGGAAATTCCTACTCCAGCAGAATGCAGTTCTTGAACGCCTTGTTGAGAAATCAAGGATGATCTCTGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAGTGAACTCTGTGATAGGCAGAGGCTGGCTGGTTCATATCTGGATGTTGCAGAATCATACCAGAAACTTAGAAGATTCAACAAAGCAATCAAATGGTACAAAAAGAGCTGGGAAATGTACAAAAATATTGGTAACTTAGAGGGGCAAGCCCTGGTGAAAATTAACATCGGTAATGTTTTGGATTCTACTAACAATTGGAGAGAAGCACTGGAGGCATTTGAAGAGAGCTACAGTATTGCTGTTGAAGCAGACCTGCCTGATGTGCAACTCTCTGCATTGGAAAATATGCATTATAGCAACATGATAAGATTTGACGATGAGGATGAGACCAGGAGGTTGAAGCTTCAAATTGATAAACTGAAGAAATCCAAAGAAAAAGAGGCGGCAGCTAAAAATTTGTCAGAAGATTGTTGCTCTGAAACTGATACTGAAGCAGGTGATTATCTGTCAAACAGTGGGTCCGATAATTTTTACTTTCCAAAGACAATTTCCCGATCGAAAGCTCTGACTACTGGAGAAGAATTTGAAGATGACGCACCACTTATGTCCCTCTATCAGTCCATAAAAAGCTCATCCAAAAAGAACACAGGATACAAAGAAAGTCTTATCAACTCTATCAAGCAAGCAGAGCAGTCACCTAGTAGTCTGAAAAATCAAACCAGCGATCATCAGACAATTGTTAGTCGTAAACGTGTCCGTGTAATCCTTTCCGATGATGACGATGATGATGAGGTGGAGTGTTCAAGCAGAAAGGATCATGATTGCATGGTAGAGGACTTGCCCACTTATGATGCCATTAAGAGTAAAGCGAGTCCTTGTAAAATTCAGGTTATCTCCGAGTATGGATCTAAGGGTCCAATTAATGTTGAAGAAAGTGGTTGTTCTTTCAAATGTTCAAGTCCACATACAGCCACAAAAACTGGCAGACATTCTAGGTCTTTGAGCAATGATGTAGTTGCTGAAGCTAATTTTCCTACTGGTTCTAAATGTGACACTGATTTCTCTGGCAAACAAAATGATATTTTCCAGCCCAGCTTTCATCATTCACAAAATGACAAATGCATTACATGCCGGATTGGGAATGATCTAGTACACGTTGAAGCAACATTGTGTACAACCGATGATCAGTTGAACATTGACTCTTTGAAGGCTGTAGTTGCATGCTTATATTATCTACAATTTCCGCCTGAAAAGAGATCAGAGGGTTTGTTGCCCATTATTGAGCATATAAAATGTGCTGGAAGAGATATGGAAACCCTTGAAACTGTTGAACATCTTAAGGAAGTTCTGGGAAATGACATGGTTGAAGCTTCCGTTGATGGATGGATTCACAAGCGCCTGATAAAAATGTACATAGACTGCTGCAAGGAGTTATCTGAGGTACCAAACATCAAGGTACTGACCAAGCTCTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGATTGCGACCTGCAAGATTTGTCTATTACACCATTGATAAATGCACTGCATTCCCAAAAGTCATTTGCGATGCTGGACCTCTCTCACAATTTGTTAGGAAATGGAACAATCGAGAAACTTCAAAAGGTGTTCACAGCATCGGGACAATCTTACGGTGGCTTAACTCTGGATTTGCATTGTAATCGATTTGGCCCGACAACATTGTTTCAGATTTGCGAGTGTTCACTGCTCTTTGCTCGACTAGAAGTTCTTAACATATCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTTTCGACAATCTTAAAAAACTGTACAGCGCTTTGTAGCTTGAATATAGAGAACTGTTGTATCACATCCAGAACTGTTCAAAATGTTGCTGATGCATTGGACTCCAGATCTGTACTTGCCCATCTATGTATAGGATACAACAGCCCTGTATCTGGAAATGCTACAGTTAATCTTCTGTCCAAGCTTTCTACTCTGAAAAGGTTTTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAAACCAGTTGTTGATACCCTTTGCAAGCTAGCAGGGACCTTAACATTATCAGGACTAATACTTGGAGGCACGGGTATAGGAACTGAAGGGGCGATAAAATTAGTAGAATCTTTGCTCAAAGGGAATGAAGAGCTTGTGAAACTTGACCTATCATATTGTGGTCTAACATGTAACTTTGTTTTGAACACCTGTTCAAATTTCTTTTGTTCCATCCTAGAGCTAAACCTGGAAGGAAATCCTATCATGCCTGAGGGTAGCGATACTTTATGTTCTCTTCTCGTAAACCCACAGTGCTGCGTCAAGGTTTTGGTTCTTAGAAAGTGTCAACTTGGGCTTGCTGGAATCCTTCACATAGTTGAGGCTCTGGCAGAGAACAGCTGCATTGAAGAACTTAATATTGCTGATAATTCTGTTCCAAAGGAATATTCTGCTCTAGAATATGATTTATCAGTAAAAGGCTGCTCCCAAAACCAGGAGCAGAAACTAGATAATATGCAAGTTGATGATAATCAAGATGTTCTTTGCTCTTTAAACACAGACAACTATAAGCTGGAAGTTGCCGATAGTGAAGATATTCCACTGGAAGCTGCTGCTTCTGGAATTGACGACAGGTGTGCCAGTTCATGTCAAAGAAATTCATCTCCCGTGTGCCATTTTACTCAACAGTTTTCAATTGCTATTGGTAAGGCAAAGAACTTGCAATTACTAGACCTTAGCAATAATGGTTTTTCTGCACAAGCTGCGGAAACATTCTATGGTTCGTGGTCGACTTTACGACCCCTTTCAAGTCAGAAGCACATTACTGAGCAGATTGTTCATTTCTCAACGAGGGAAAATAAGTGCTGCAGAGTGAAACCTTGCTGCAAGAAAGTTTGA 3954 0.4264 MDAELKSAKAAFRNAEAEGNRREEARWANVIGDILKNRGEYVAALKWLRIDYEISLKHLPEKQLLPTCQSLGEMYLRLEEFPNALIYQKKHLELARDANDVVEQQRASTQLGRTYHELFSRSDHDHNSIRNAKKYFKCAMDLAVKLKENPPNSKSSFLKEYIDAHNNIGMLEMDLENLYEARKILTTGLEICDEEEVAEFDDSRSRLHHNLGNVYMELRLWDEARKNIKRDIVICNRIGHCQGEAKGYINLGEMHYRTQRYEDARAYYEKALGLAKSLEDEDALVRQIEQNIETVREAVKVMADITKEEQSLKKLKRDVVAARGTSHERKFLLQQNAVLERLVEKSRMISAWEKHCEFAKEKKKIASELCDRQRLAGSYLDVAESYQKLRRFNKAIKWYKKSWEMYKNIGNLEGQALVKINIGNVLDSTNNWREALEAFEESYSIAVEADLPDVQLSALENMHYSNMIRFDDEDETRRLKLQIDKLKKSKEKEAAAKNLSEDCCSETDTEAGDYLSNSGSDNFYFPKTISRSKALTTGEEFEDDAPLMSLYQSIKSSSKKNTGYKESLINSIKQAEQSPSSLKNQTSDHQTIVSRKRVRVILSDDDDDDEVECSSRKDHDCMVEDLPTYDAIKSKASPCKIQVISEYGSKGPINVEESGCSFKCSSPHTATKTGRHSRSLSNDVVAEANFPTGSKCDTDFSGKQNDIFQPSFHHSQNDKCITCRIGNDLVHVEATLCTTDDQLNIDSLKAVVACLYYLQFPPEKRSEGLLPIIEHIKCAGRDMETLETVEHLKEVLGNDMVEASVDGWIHKRLIKMYIDCCKELSEVPNIKVLTKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLQKVFTASGQSYGGLTLDLHCNRFGPTTLFQICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLNIENCCITSRTVQNVADALDSRSVLAHLCIGYNSPVSGNATVNLLSKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGTLTLSGLILGGTGIGTEGAIKLVESLLKGNEELVKLDLSYCGLTCNFVLNTCSNFFCSILELNLEGNPIMPEGSDTLCSLLVNPQCCVKVLVLRKCQLGLAGILHIVEALAENSCIEELNIADNSVPKEYSALEYDLSVKGCSQNQEQKLDNMQVDDNQDVLCSLNTDNYKLEVADSEDIPLEAAASGIDDRCASSCQRNSSPVCHFTQQFSIAIGKAKNLQLLDLSNNGFSAQAAETFYGSWSTLRPLSSQKHITEQIVHFSTRENKCCRVKPCCKKV* 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03416 1317 SMART tpr_5 205 238 IPR019734 GO:0005515
Lapu3g03416 1317 SMART tpr_5 162 195 IPR019734 GO:0005515
Lapu3g03416 1317 SMART tpr_5 416 449 IPR019734 GO:0005515
Lapu3g03416 1317 SMART tpr_5 245 278 IPR019734 GO:0005515
Lapu3g03416 1317 SMART tpr_5 376 409 IPR019734 GO:0005515
Lapu3g03416 1317 SMART tpr_5 65 98 IPR019734 GO:0005515
Lapu3g03416 1317 SMART LRR_RI_2 1094 1121 - -
Lapu3g03416 1317 SMART LRR_RI_2 1123 1150 - -
Lapu3g03416 1317 SMART LRR_RI_2 1039 1066 - -
Lapu3g03416 1317 SMART LRR_RI_2 868 895 - -
Lapu3g03416 1317 SMART LRR_RI_2 927 954 - -
Lapu3g03416 1317 SMART LRR_RI_2 955 982 - -
Lapu3g03416 1317 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Lapu3g03416 1317 ProSiteProfiles TPR repeat region circular profile. 245 272 - -
Lapu3g03416 1317 Coils Coil 278 318 - -
Lapu3g03416 1317 Pfam Tetratricopeptide repeat 205 276 - -
Lapu3g03416 1317 Pfam Tetratricopeptide repeat 377 446 - -
Lapu3g03416 1317 FunFam Protein TONSOKU 820 1192 - -
Lapu3g03416 1317 FunFam tonsoku-like protein 309 469 - -
Lapu3g03416 1317 Gene3D Ribonuclease Inhibitor 819 1232 IPR032675 -
Lapu3g03416 1317 FunFam Protein TONSOKU 1 154 - -
Lapu3g03416 1317 SUPERFAMILY RNI-like 835 1286 - -
Lapu3g03416 1317 PANTHER PROTEIN TONSOKU 2 1316 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Lapu3g03416 1317 Gene3D Tetratricopeptide repeat domain 312 498 IPR011990 GO:0005515
Lapu3g03416 1317 Gene3D Tetratricopeptide repeat domain 1 311 IPR011990 GO:0005515
Lapu3g03416 1317 SUPERFAMILY TPR-like 161 445 IPR011990 GO:0005515
Lapu3g03416 1317 SUPERFAMILY TPR-like 19 195 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03416 Lapu-Chr3 57368510 57378007 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03416 - - gmx:100805682 2219.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03416 3 57368510 57378007 Lapu3g03416 3 57368510 57378007 ECH