Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02921 ATGTCTATAACCCATAACCTCGCTACTTCACTCTCTTCTTCTTCCTCTGCTTTCTTAGCTCCCTCTTCCTTCAATTCTAGGGGACATATTTCATTGCCTGTGAAGAGCGTGAGCATTTGCAAATGCGTTGCTACACCCGAGGCTGAGACTGGCTACAAGACAAGGGTCACTCGCAATCCAAATATGGGGAAACTTCAAGCTGGCTATCTATTTCCTGAGATTGCTAGAAGAAGGTCTGCACACTTGCTGAAGTACCCTGATGCTAAAGTTATAAGCCTTGGAATTGGTGACACTACTGAACCTATTCCTGAAGTCATAACTGATGCAATGTCAAAGAGATCACAAGCATTGTCAACTATTGAAGGATATAGTGGGTATGGAGCTGAACAAGGTGAAAAGCCATTAAGAAGTGCAATTGCTTCAACATTTTACAGCGATCTTGGCATAGAAGAGGATGATATATTTGTCTCAGATGGTGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTCGGGTCAAATGTAAAAATGGCTGTACAAGACCCTTCATACCCGGCCTATGTAGACTCAAGTGTAATTATGGGCCAGACCGGCCTCTACCAGAAGGATGTTGAGAAGTTTGCAAACATTGAATACATGAGGTGTAATCCGGAAAATGGTTTCTTCCCTGATTTATCTTCAATTTCTCGACCAGACATAATCTTTTTCTGTTCGCCAAACAATCCTACTGGTGCTGCAGCAACAAGGGAACAACTGACCCAACTAGTTCAGTTTGCTAAGGACAATGGTACTGTAGTAATCCATGATTCAGCTTATGCAATGTATATTTCTGGTGACAACCCACGTTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCCATCGAGACTTCATCATTTAGCAAGTATGCTGGGTTCACTGGAGTCCGATTAGGTTGGACTGTGATTCCAAAGCAGTTGCTATTTTCTGATGGATTTCCTATTGCCAGGGACTTCAACCGTATTGTATGCACTTGTTTCAATGGTGCATCAAATATTTCCCAGGCAGGTGGTCTGGCTTGCCTTTCACCAGAAGGTCTTAAGGCTATGCGAGAGGTTATTGGATTCTACAAAGAAAATACCAACATAATTGTGGAGACATTTGATTCTCTTGGATTTAAAGTCTATGGAGGGAAAGATGCACCATATGTGTGGGTTCATTTCCCTGGCCGAAGCTCATGGGATGTGTTCGCTGAGATTCTTGAGAAGACTCATGTGGTTACAACTCCTGGTAGTGGTTTTGGACCAGGTGGTGAAGGTTTTGTCAGGGTTAGTGCCTTTGGTCACAGGGAAAACGTCTTGGAGGCATGCAGAAGGTTCAAACAGCTATACAATTGA 1377 0.4314 MSITHNLATSLSSSSSAFLAPSSFNSRGHISLPVKSVSICKCVATPEAETGYKTRVTRNPNMGKLQAGYLFPEIARRRSAHLLKYPDAKVISLGIGDTTEPIPEVITDAMSKRSQALSTIEGYSGYGAEQGEKPLRSAIASTFYSDLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVEKFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQFAKDNGTVVIHDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKQLLFSDGFPIARDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMREVIGFYKENTNIIVETFDSLGFKVYGGKDAPYVWVHFPGRSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACRRFKQLYN* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02921 458 FunFam LL-diaminopimelate aminotransferase, chloroplastic 343 454 - -
Lapu3g02921 458 Gene3D - 100 357 IPR015421 GO:0003824
Lapu3g02921 458 SUPERFAMILY PLP-dependent transferases 69 453 IPR015424 -
Lapu3g02921 458 Gene3D Aspartate Aminotransferase, domain 1 70 454 IPR015422 GO:0003824
Lapu3g02921 458 Pfam Aminotransferase class I and II 89 453 IPR004839 GO:0009058|GO:0030170
Lapu3g02921 458 CDD AAT_like 91 455 - -
Lapu3g02921 458 Hamap LL-diaminopimelate aminotransferase [dapL]. 57 456 IPR019942 GO:0008483
Lapu3g02921 458 NCBIfam LL-diaminopimelate aminotransferase 57 455 IPR019942 GO:0008483
Lapu3g02921 458 FunFam LL-diaminopimelate aminotransferase, chloroplastic 100 357 - -
Lapu3g02921 458 PANTHER AMINOTRANSFERASE 5 458 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02921 Lapu-Chr3 52269379 52275848 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02921 K10206 - gmx:100801405 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02921 3 52269379 52275848 Lapu3g02921 3 52269379 52275848 ECH