Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02919 ATGGAGGCACGTGCAGGAGCCAATAAGCGGATTGCAAGAATCTCTGCTCATCTTCACCCTTCAAATTTCCAGGAAGGGGGTGATGTTATTCTCAAGAGAGCTGAGTGCAGAGCAAAGGGTGGTGCACCTGGATTCAAAGTGGCAATTTTGGGGGCTGCTGGGGGAATTGGTCAATCCCTTTCTTTGTTGATGAAGATTAACCCATTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAACACCCCCGGTGTCACAGCTGATATTAGCCACATGGACACCGGTGCTGTGGTTCGTGGCTTTCTGGGACAGCCACAACTCGAGAGTGCACTCACTGGCATGGACTTGGTAATCATACCCGCTGGGGTGCCAAGGAAACCTGGGATGACAAGGGATGATTTGTTTAAAATAAATGCTGGAATTGTGAGGACCCTTAGTGAAGGAATTGCCAAGTGCTGCCCCAATGCAATTGTCAACTTGATCAGTAATCCAGTGAATTCCACAGTTGCTATTGCTGCAGAGGTTTTCAAGAAAGCTGGTACATACGACCCAAAGCGACTACTGGGTGTTACAGCCCTTGACGTTGTGAGGGCAAATACTTTTGTGGCAGAGGTACTTGGAGTGGATCCAAGAGAGGTTGATGTTCCTGTGGTGGGAGGTCATGCTGGGGTCACAATTTTGCCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACAAATCGCATTCAAAATGGTGGAACTGAAGTTGTGGAGGCAAAAGCTGGGACTGGTTCGGCAACACTATCAATGGCATATGCAGCAGCCAAGTTTGCGGACGCATGCCTCCGTGGCTTAAAAGGAGAAGCTGGGGTGGTGGAGTGTGCTTTTGTTGATTCTCAGGTTACGGAACTTCCCTTCTTTGCAACCAAGGTACGTCTCGGTCGTGCTGGAGCAGAAGAGGTATATCAACTAGGCCCCCTGAACGAGTATGAAAGGATTGGGTTGGAAAAAGCGAAGAAAGAGCTAGCAGGAAGCATCCAGAAGGGTATAGACTTCATCAGAAAATAA 1071 0.4809 MEARAGANKRIARISAHLHPSNFQEGGDVILKRAECRAKGGAPGFKVAILGAAGGIGQSLSLLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLSEGIAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKRLLGVTALDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGTGSATLSMAYAAAKFADACLRGLKGEAGVVECAFVDSQVTELPFFATKVRLGRAGAEEVYQLGPLNEYERIGLEKAKKELAGSIQKGIDFIRK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02919 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 188 IPR036291 -
Lapu3g02919 356 PIRSF Lac_mal_DH 44 354 IPR001557 GO:0016616|GO:0019752
Lapu3g02919 356 Gene3D - 37 189 - -
Lapu3g02919 356 FunFam Malate dehydrogenase 43 189 - -
Lapu3g02919 356 Pfam lactate/malate dehydrogenase, NAD binding domain 46 188 IPR001236 GO:0016491
Lapu3g02919 356 PANTHER MALATE AND LACTATE DEHYDROGENASE 30 355 - -
Lapu3g02919 356 SUPERFAMILY LDH C-terminal domain-like 189 354 IPR015955 GO:0003824|GO:0016616
Lapu3g02919 356 CDD MDH_glyoxysomal_mitochondrial 45 354 IPR010097 GO:0006099|GO:0030060
Lapu3g02919 356 Gene3D - 190 356 IPR015955 GO:0003824|GO:0016616
Lapu3g02919 356 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 190 353 IPR022383 GO:0016616
Lapu3g02919 356 FunFam Malate dehydrogenase 190 356 - -
Lapu3g02919 356 NCBIfam malate dehydrogenase 46 355 IPR010097 GO:0006099|GO:0030060
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02919 Lapu-Chr3 52246912 52250976 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02919 K00026 - gmx:100170735 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02919 3 52246912 52250976 Lapu3g02919 3 52246912 52250976 ECH