Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02916 ATGGCTTCCTCGGAGATCGAGGTGGTATCGTCATCATCATCGGTCTCCAAACCCAACGACCAGCCTCTTATCCTCAACATCTTCACCGCCTCTGCGCACGGCGACTTCAACAAATTGAGAACCTTCGTCGAACAACACGCTGCCTCCGTTTCCGTTCCCGATGTCAGTGGCTATTACGCTCTTCAATGGGCCTCGCTTAACAACTTCCACGACATTGCGCACTATCTCATTCAGCATGGAGCTGATGTGAATGCAAAAGACAACATGCATCAAACAGCATTGCATTGGGCAGCAGTTCGTGGTTCAACTGCAGCTGCTGATGTGCTTGTGGAGAATGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGACAGACCGCTTTCCTAAATCACATTGTAGTAAAGTACCGTGCCGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCATGTCAAGGAAGACAAGATAAAGATGGTTGTACACCGTTGCACTGGGCTGCATTAGGAGGAAATGCAGAGGCATGCGCTGTGCTTGTACATGCAGGCACAAAGGAAGAATTGATGGTGAAGGACAATGCTGAACACACACCTGTACAGCTTGCATATGATAAAGGTCATCGACATGTCGCAACTTTCCTTTCAAATCAACAACGGGCTCGTAGCAACTACTGGAAAGGGAAACTTTGTGGTGGGGTGGTGACAGATATTGGTTATGCTCCCATCTTACTGTGTGTTATGATCTCTCTCATGATCCTCTTCATCAACTCAGTTATCGCAGCTCCTAACCTTGGAAAGATTACCGCTGTTCTTGGACTTTGGGCATGGACGGCACTTTCTCTAGAAGCTGCTGCCCTGATTATGTTTTATAGGTGTAGTAGCAAAGATCCTGGTTATATAAAACGGCTGGGAGACTTGGGTACTCAAAGTGATAGAGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAGCTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCTACTTGTAAGCGATGTGTGGAACAGTTCGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCCTGGGAACTTTGACTTCTTCCGTTTCTGGTATTGTTGCAGTTCAAAGGATTTGGACATCTACACCAGCATTACTGGCAGGGGAAACATGGATCCAATATGTGTTAATAAGACATCCAGGTTTAGTTGTATTTTTGGTGATGGACGCTGTTGTTTTCATTGCAGCTACAACATTAACAATAACACAGACTTCCATGGTGATTGCTTATATCCTAAAGTGGAGCATCTATCACTTGATTGCTAGAAATATGACCACAAATGAACTAGCAAATTCCTCCCGCTACGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCACGGTTGTCGGAAGAATTGTGCCGACTTCCTTTCTCTGGGATATACAAACGATGATGAAATTGCTTGGCCTCGTTTACAGCAGGTGGCAACTTGA 1662 0.4489 MASSEIEVVSSSSSVSKPNDQPLILNIFTASAHGDFNKLRTFVEQHAASVSVPDVSGYYALQWASLNNFHDIAHYLIQHGADVNAKDNMHQTALHWAAVRGSTAAADVLVENGARVEAADVNGYRAVHVAAQYGQTAFLNHIVVKYRADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDACQGRQDKDGCTPLHWAALGGNAEACAVLVHAGTKEELMVKDNAEHTPVQLAYDKGHRHVATFLSNQQRARSNYWKGKLCGGVVTDIGYAPILLCVMISLMILFINSVIAAPNLGKITAVLGLWAWTALSLEAAALIMFYRCSSKDPGYIKRLGDLGTQSDREDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSVSGIVAVQRIWTSTPALLAGETWIQYVLIRHPGLVVFLVMDAVVFIAATTLTITQTSMVIAYILKWSIYHLIARNMTTNELANSSRYDYLRGPDGRFRNPYNHGCRKNCADFLSLGYTNDDEIAWPRLQQVAT* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02916 553 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Lapu3g02916 553 Pfam Ankyrin repeats (3 copies) 128 213 IPR002110 GO:0005515
Lapu3g02916 553 Pfam Ankyrin repeats (3 copies) 31 119 IPR002110 GO:0005515
Lapu3g02916 553 FunFam S-acyltransferase 143 251 - -
Lapu3g02916 553 SMART ANK_2a 89 118 IPR002110 GO:0005515
Lapu3g02916 553 SMART ANK_2a 224 254 IPR002110 GO:0005515
Lapu3g02916 553 SMART ANK_2a 122 152 IPR002110 GO:0005515
Lapu3g02916 553 SMART ANK_2a 56 85 IPR002110 GO:0005515
Lapu3g02916 553 SMART ANK_2a 189 218 IPR002110 GO:0005515
Lapu3g02916 553 SMART ANK_2a 156 185 IPR002110 GO:0005515
Lapu3g02916 553 ProSiteProfiles Ankyrin repeat profile. 189 221 IPR002110 GO:0005515
Lapu3g02916 553 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515
Lapu3g02916 553 ProSiteProfiles Ankyrin repeat region circular profile. 156 177 - -
Lapu3g02916 553 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 7 539 - -
Lapu3g02916 553 ProSiteProfiles DHHC domain profile. 363 413 - -
Lapu3g02916 553 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Lapu3g02916 553 Gene3D - 16 142 IPR036770 -
Lapu3g02916 553 FunFam S-acyltransferase 12 142 - -
Lapu3g02916 553 ProSiteProfiles Ankyrin repeat profile. 122 155 IPR002110 GO:0005515
Lapu3g02916 553 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Lapu3g02916 553 Pfam DHHC palmitoyltransferase 363 503 IPR001594 GO:0016409
Lapu3g02916 553 SUPERFAMILY Ankyrin repeat 27 246 IPR036770 -
Lapu3g02916 553 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
Lapu3g02916 553 Gene3D - 143 255 IPR036770 -
Lapu3g02916 553 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02916 Lapu-Chr3 52214468 52229197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02916 30 213 Miscellaneous Gene Families AT1G07710 26.064 2.94e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02916 K20032 - gmx:100807263 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02916 3 52214468 52229197 Lapu3g02916 3 52214468 52229197 ECH