Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02904 ATGGCCGCCGCCGCCTTGCTCCGTTCTCTCCGTCGCCGAGACCTTCCCACTTCCTCTCTCTATGCCTTTCGATCGCTGACCAGCAGCACAAAGACATCATATGTAGGTTACAAGTGGGCTAGTTTGTCTCGACCATTCAGTTCAAAGCCTGCTGGTAATGATGTCATTGGAATTGATCTGGGTACTACCAATTCATGTGTTGCTGTTATGGAGGGAAAGGTAAGATATTCTCTCTTAATTTGTTTAGACAATCCTAAAGTCATTGAGAATTCTGAAGGAGCTCGAACAACACCATCAGTGGTTGCCTTTAACCAGAAAGCAGAGCTTCTTGTTGGTACACCAGCCAAGCGTCAGGCTGTGACTAACCCAACAAACACTCTTTTTGGAACTAAGCGGATGATTGGTAGGCGGTTTGATGATCCTCAAACTCAGAAGGAGATGAAGATGGTACCATTCAAGATTGTTAGAGCACCCAATGGAGATGCTTGGGTTGAAGCCAATGGCCAGCAGTACTCTCCCAGCCAAATTGGTGCTTTTGTTCTCACCAAGATGAAGGAAACTGCTGAATCATATCTTGGAAAGTCAGTTTCAAAAGCTGTAATTACTGTGCCAGCTTACTTCAATGATGCACAAAGACAGGCAACAAAAGATGCTGGCAGAATTGCTGGTCTTGATGTCCAGAGAATCATCAATGAGCCCACGGCTGCTGCACTTTCATATGGGATGAACAACAAGGAGGGCCTCATTGCAGTTTTTGATCTTGGAGGTGGAACTTTTGATGTGTCCATCTTAGAGATTTCTAATGGTGTTTTTGAGGTGAAAGCAACAAATGGTGACACTTTCTTGGGAGGAGAGGATTTTGATAATGCTTTATTGGACTATCTAGTGAACGAATTCAAAAGATCTGAGAGCATTGACCTTTCAAAGGATAGGCTTGCCTTGCAGAGGCTTCGGGAAGCTGCTGAGAAAGCAAAAATAGAATTATCTTCGACATCTCAAACAGAAATCAATCTTCCTTTCATCACTGCTGATGCATCTGGTGCAAAGCATCTGAACATCACATTGACAAGATCCAAGTTTGAGGCTTTAGTTAACCACTTGATTGAAAGGACAAAGACACCGTGTAAGAGCTGCTTGAAGGATGCTAACGTATCTATCAAGGATGTTGATGAGGTTCTTCTGGTTGGAGGGATGACCCGTGTGCCTAAAGTCCAGGAGGTGGTTTCAGAGATCTTTGGAAAGAGTCCTAGCAAAGGAGTAAATCCTGATGAGGCAGTTGCCATGGGAGCAGCTATTCAAGGCGGTATCTTACGTGGAGATGTTAAAGAGCTATTACTCCTCGATGTCACTCCACTTTCTCTGGGTATTGAGACTTTGGGTGGTATATTTACCAGGTTGATAAACCGTAACACCACAATTCCTACGAAAAAAAGCCAGGTGTTTTCAACAGCAGCTGACAATCAGACTCAGGTTGGTATCAAGGTTCTACAAGGTGAGCGGGAAATGGCTACAGACAACAAAACGCTTGGAGAATTTGAGCTTGTTGGCATTCCTCCTGCCCCAAGAGGTATCCCTCAGATTGAAGTCACATTTGACATAGATGCCAACGGGATTGTTACTGTCTCTGCCAAAGACAAATCCACTGGGAAAGAACAGCAAATCACCATCCGATCATCTGGAGGACTCTCAGAAGATGAGATCGATAAGATGGTCAAAGAAGCAGAGTTGCATGCTCAGAGAGACCAAGAAAGAAAAACTCTCATTGACATTAGAAACAGTGCAGATACAACCATCTACAGCATTGAGAAGAGTTTAGGTGAGTACAGAGAGAAGATTCCCAGTGAAATGGCCAAAGAGATTGAAGATGCAGTATCAGATTTGAGAACGGCAATGGCAGGGGAAAATGTTGATGAAATTAAGGCAAAGCTTGATGCAGCGAACAAAGCTGTCTCCAAGATTGGACAGCACATGTCAGGTGGTTCTAGTGGTGGTTCCTCCACTGGAGGTTCTCAGGGTGGTGACCAGGCTCCCGAGGCGGAGTATGAAGAAGTCAAGAAGTGA 2061 0.4459 MAAAALLRSLRRRDLPTSSLYAFRSLTSSTKTSYVGYKWASLSRPFSSKPAGNDVIGIDLGTTNSCVAVMEGKVRYSLLICLDNPKVIENSEGARTTPSVVAFNQKAELLVGTPAKRQAVTNPTNTLFGTKRMIGRRFDDPQTQKEMKMVPFKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDYLVNEFKRSESIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKTPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMATDNKTLGEFELVGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIDKMVKEAELHAQRDQERKTLIDIRNSADTTIYSIEKSLGEYREKIPSEMAKEIEDAVSDLRTAMAGENVDEIKAKLDAANKAVSKIGQHMSGGSSGGSSTGGSQGGDQAPEAEYEEVKK* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02904 686 Gene3D Actin; Chain A, domain 4 284 371 - -
Lapu3g02904 686 SUPERFAMILY Actin-like ATPase domain 246 437 IPR043129 -
Lapu3g02904 686 Gene3D - 56 434 - -
Lapu3g02904 686 Hamap Chaperone protein DnaK [dnaK]. 52 684 IPR012725 GO:0005524|GO:0006457|GO:0051082
Lapu3g02904 686 ProSitePatterns Heat shock hsp70 proteins family signature 2. 251 264 IPR018181 -
Lapu3g02904 686 FunFam Chaperone protein HscA homolog 248 305 - -
Lapu3g02904 686 ProSitePatterns Heat shock hsp70 proteins family signature 1. 58 65 IPR018181 -
Lapu3g02904 686 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 437 561 IPR029047 -
Lapu3g02904 686 SUPERFAMILY Actin-like ATPase domain 55 245 IPR043129 -
Lapu3g02904 686 CDD HSPA9-like_NBD 52 437 - -
Lapu3g02904 686 Gene3D - 241 421 - -
Lapu3g02904 686 MobiDBLite consensus disorder prediction 654 673 - -
Lapu3g02904 686 FunFam Chaperone protein DnaK HSP70 433 616 - -
Lapu3g02904 686 NCBIfam molecular chaperone DnaK 55 657 IPR012725 GO:0005524|GO:0006457|GO:0051082
Lapu3g02904 686 PRINTS 70kDa heat shock protein signature 115 123 - -
Lapu3g02904 686 PRINTS 70kDa heat shock protein signature 420 440 - -
Lapu3g02904 686 PRINTS 70kDa heat shock protein signature 443 462 - -
Lapu3g02904 686 PRINTS 70kDa heat shock protein signature 54 67 - -
Lapu3g02904 686 PRINTS 70kDa heat shock protein signature 524 540 - -
Lapu3g02904 686 PRINTS 70kDa heat shock protein signature 257 267 - -
Lapu3g02904 686 PRINTS 70kDa heat shock protein signature 199 219 - -
Lapu3g02904 686 PRINTS 70kDa heat shock protein signature 389 405 - -
Lapu3g02904 686 FunFam Molecular chaperone DnaK 284 371 - -
Lapu3g02904 686 FunFam Heat shock protein 9 128 179 - -
Lapu3g02904 686 ProSitePatterns Heat shock hsp70 proteins family signature 3. 392 406 IPR018181 -
Lapu3g02904 686 MobiDBLite consensus disorder prediction 652 686 - -
Lapu3g02904 686 Gene3D - 562 659 IPR029048 -
Lapu3g02904 686 PANTHER HEAT SHOCK PROTEIN 70KDA 55 622 IPR013126 GO:0005524|GO:0140662
Lapu3g02904 686 Pfam Hsp70 protein 55 657 IPR013126 GO:0005524|GO:0140662
Lapu3g02904 686 Coils Coil 307 334 - -
Lapu3g02904 686 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 439 595 IPR029047 -
Lapu3g02904 686 FunFam Molecular chaperone DnaK 562 662 - -
Lapu3g02904 686 FunFam Molecular chaperone DnaK 56 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02904 Lapu-Chr3 52101296 52105541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02904 55 663 Miscellaneous Gene Families AT5G42020 50.000 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02904 K04043 - gmx:100811003 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02904 3 52101296 52105541 Lapu6g01124 6 11208466 11212249 PCT