Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02595 ATGGAGTCGGATTCTGATTCGGATGGGTCTCACGTCTCCGCAACTCCTCCGAGAAAATTAAGTTCACCACCGCGGCCTCCACCACCACCTCTCGTGGTTTCAAACAAATCCCGAATCAGAATCAAACCCTCAAAATCAAAACCAGCCCCTTGCGGATCCTCCAAAGCCCCGTCGAAACCCGAACCGATCCAGGAAACCCCTATCTCCCTTCCCACTGATATCCCCTTCCAAATTCGGCGACCTTCCAAACCGCCGTCAGTTTCCTCTTCCATCGAAACTCTCCCTGCTGGTTTCCTTTTCGCCTCCCACTCCGCTTCGTTCGCGAGGATTCGAAGACCGCTCTTTAACCTAGAATCTTCTGGAATCGAACCAGTTCTTACTTCCGCCGTGTCTGATTCACGCGCTGAGAGCGCCGATGCTAGGAAACGCGGAAAGACGCGGCTTCCGAACCTGATAGGCGCCAGCGCGCCTGTGGCCACAGTGAAGCCTCGACCATGCAGCGGCGGCGATGGGAACTTCGTGAGGCTTAACTTGAGTGGGAAGCGAAGGAAGTTCCTGAACAAGAAGGGAAAATTCGGCGGGAAAAGGTTCAAGAGAGGGAAATTCAAATCTCAGCACGAAATGGAGGGGGAAGAGAAGGATATTGGAGAGTTGAAGCAGAGAGGGGGTTGTAAGATTCGTGAGATTGATTGCGCTCTGGTGGAAGAGGCTGTGGCTACGGCGCTTGATGAGCCTTCGGAGGAGAATTTGGAGGAGATTTTAAAATTGGTTTATGGATATGATTGTTTTCGGGACGGGCAGGTTGAGGCGATTAAGATGGTTCTTGCTGGGAAGTCAGGAGTGGTTGTTTTGCCGACCGGCGCTGGGAAGTCGCTGTGTTATCAGTTGCCTGCTCTGATCTTGCCTGGGATTACATTGGTTGTTAGTCCATTGGTGGCTTTGATGATTGATCAGCTGAGGCAATTGCCTCATGTGATTAGGGGTGGTCTTCTATCCAGTACTCAGACACCTGAAGAAGCCTCGGAATCACTCATGCAGCTTCGACAAGGGGGGATAAAGGTGCTTTTTGTTTCACCGGAACGGTTTCTGAATGAAGAGTTTCTGTCTACTATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCATCTTTTATGAGACTTAGAGCATCTCTGCTTCGTAAGACACTTGATGTTCGTGCTGTGCTTGCAATGACAGCAACTGCTACTACCACAACTTTAGATGCCATCATGTCTGCTCTAGATATCCCTTCCACAAATCTTATTCAGAAGGCGCAGTTAAGGGACAATTTTCATTTATCAGTGTCTACGGTCAGAAATAGGCAAGTTAGATGCTTCTATTTACTACTTGAGCTTGTATACTTTCATTGTGTTACACTTATGTCTCAATTCTTTGAACATATTAGAATGAAAGACCTACTAATTTTGATAAAGTCCCCTCCTTTTGCGGAAGTTCAGAGCATCATCATATACTGCAAATTTCAGTATGAAACTGATCAAATTAGCAGATATTTGAATGATAACAATATCTTGGCAAAGGTTGTCGCAACTGTGGCATTTGGCATGGGACTAGACAAAAGTGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGACGATGAGACATTTTTCAAACTTCGTAGTCTAATGTACAGTGATGGAGTAGATGAATATGCAGTGAACAAATTTCTGCATGAAGTCTTTCCAGCTGCTGATAAAAGCTCCTGTGGGAAAATATGCTCATTAATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTTACTCTTCTGACACGCTTGGAGTTGGGTAATGTGCAGTACTTGCAGTTACTTCCACAGATAAATGCAACTTGCACTTTGGCTTTCCATAAGACTACTCCGCCATTACTTGCCCAAAAAGTATCTGCTATAGCTGTAATTCTAAAACGATCTGAAAATAAGCATGGGCAATATATTTTTGACATTCCTACTGTGGCAAATGACATGGGGATTACAGCAGTTGAATTAACAAATCAGCTGAATGACCTGAAGTTGATGGGAGAAATAACTTACGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCTACAGACTTGTTATCACTATCAGAAGATATTACCCAATGGTTATCAGAAGTTGAAAATTGTAAGGTACGGAAAATGGATGCAATGTTTAGTGCTGTATATTTTGCATTAAATCTATGTGATAAGATGCAAGGTTGCAGTGGCACCAATCACACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGGTTTCTGCAATAAAATTGGCCAAAGCAGTCCTTTCCTGCGAGCGGATATAAAGGTCTTTCTGCAGAGCAATTCACAGGCCCGATTTACACCAAGAGCTGTTGCGAGAGTAATGCATGGAATTCCTAGCCCAGCATATCCTTCATCAGTATGGAGTAAAACTCATTTCTGGGGAAGGTATACACGAATAGACTTTAAGGTAGTGATGGAAGCAGCAAAGGACGAACTTAAGAATTTCGTCGGAAAAGATATGCTCTAA 2715 0.442 MESDSDSDGSHVSATPPRKLSSPPRPPPPPLVVSNKSRIRIKPSKSKPAPCGSSKAPSKPEPIQETPISLPTDIPFQIRRPSKPPSVSSSIETLPAGFLFASHSASFARIRRPLFNLESSGIEPVLTSAVSDSRAESADARKRGKTRLPNLIGASAPVATVKPRPCSGGDGNFVRLNLSGKRRKFLNKKGKFGGKRFKRGKFKSQHEMEGEEKDIGELKQRGGCKIREIDCALVEEAVATALDEPSEENLEEILKLVYGYDCFRDGQVEAIKMVLAGKSGVVVLPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPHVIRGGLLSSTQTPEEASESLMQLRQGGIKVLFVSPERFLNEEFLSTISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLRKTLDVRAVLAMTATATTTTLDAIMSALDIPSTNLIQKAQLRDNFHLSVSTVRNRQVRCFYLLLELVYFHCVTLMSQFFEHIRMKDLLILIKSPPFAEVQSIIIYCKFQYETDQISRYLNDNNILAKVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETFFKLRSLMYSDGVDEYAVNKFLHEVFPAADKSSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGNVQYLQLLPQINATCTLAFHKTTPPLLAQKVSAIAVILKRSENKHGQYIFDIPTVANDMGITAVELTNQLNDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSEDITQWLSEVENCKVRKMDAMFSAVYFALNLCDKMQGCSGTNHTPCLQRKILDYFSGVDNAGFCNKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIPSPAYPSSVWSKTHFWGRYTRIDFKVVMEAAKDELKNFVGKDML* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02595 904 Pfam Helicase conserved C-terminal domain 505 575 IPR001650 -
Lapu3g02595 904 SMART helicmild6 492 576 IPR001650 -
Lapu3g02595 904 CDD DEXHc_RecQ4-like 251 444 - -
Lapu3g02595 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 588 IPR027417 -
Lapu3g02595 904 Gene3D - 234 441 IPR027417 -
Lapu3g02595 904 PANTHER DNA HELICASE RECQ FAMILY MEMBER 240 764 - -
Lapu3g02595 904 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 271 441 IPR014001 -
Lapu3g02595 904 FunFam ATP-dependent DNA helicase Q4 232 441 - -
Lapu3g02595 904 MobiDBLite consensus disorder prediction 1 88 - -
Lapu3g02595 904 Pfam DEAD/DEAH box helicase 265 427 IPR011545 GO:0003676|GO:0005524
Lapu3g02595 904 MobiDBLite consensus disorder prediction 19 33 - -
Lapu3g02595 904 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 622 IPR001650 -
Lapu3g02595 904 SMART ultradead3 259 455 IPR014001 -
Lapu3g02595 904 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 378 387 IPR002464 -
Lapu3g02595 904 Gene3D - 531 633 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02595 Lapu-Chr3 48295028 48304602 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02595 K10730 - gmx:100811214 1365.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02595 3 48295028 48304602 Lapu3g02595 3 48295028 48304602 ECH