Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02572 ATGAGGGACATGAGAACAAGGAGAGGAGCGTGTTATTCTGGAGTAGTGTCAAGGATGTGTTCCGATGTCAGGGTTCCCAAGAAAAACAAGGATCTGCACATGCATATGCGTATGCATGTCGCCGGAGACTCCTTTCTTTACAGCCGGAAAAGGCAGAAGAGGACGCCGGAAAAAACCGTTACCGATTACGATTTTTTTGAGTCTTTGCCGGATGACCTTGTAATCTCTATCTTCTGCAAACTTAGTTCTACCGCCACTAAACCTTCCGATTTTCTCAATGTTTTAATCACGTGTAGGAGATTAAACAAGTTAGCACTTCATTCGCTTGTTTTGTCCAAAGTTTCTCCCAGGGCTTTGGCTATCAGAGCCAAAGATTGGTGCGATTCAGCGCACCGTTTCCTCAAACACTGTGCGGATTCCGGAAATGTTGAAGCCTGTTACATTTTAGGCATGATTCGGTTTTACTGTTTGCAAAACAGAGGGAGCGGCGCTTCGTTAATGGCGAAGGCCGCGATAAACTCTCACGCGCGTGCTCTGTACTCGCTAGCCGTGATTCAGTTCAACGGCAGCGGCGGAACCAAAAGCGACAAGGACCTACGCGCCGGAGTGGCGCTTTGCGCGAGAGCGGCGTTTCTCGGCCACGTCGACGCGCTGCGCGAGCTCGGTCACTGCCTCCAAGACGGTTACGGCGTGCGGCAGAACATCGCCGAGGGACGGCGGTTTCTCGTGCAGGCCAACGCGCGGGAGCTCGCGGCCGTGTTGTCCACGAGCGCCGCCGCACGCCACTGGCTGACATGCAACCTTCAGCCACAGCTCCGGCAGGGTATCGGATGTCCATTGCTCAGCGATTTCGGGTGTAACGTGCCGACGCCGGAGGTGCATCCGGCCAGCCGGTTCATGGCGGAGTGGTTCGCCGCTCGCGGCGGTTCTCCAGGAGAGGGGCTGAGATTGTGTTCGCACGCGGGGTGCGGGAGGCCCGAGTCGAGGAAACACGAGTTTCGAAGGTGTTCCGTATGTGGTGTGGTGAACTATTGCTCACGCGCATGCCAAGCGCTTGATTGGAAGTTCAGGCACAAGGCGGAGTGCGCCCCCGCGGAGCGGTGGGTCGATGAAGATGGCGAAGACCTCGGTGACGACGATAGTGACGGCGAGGTGATGGTTATGGCGGATAGTTAG 1176 0.5587 MRDMRTRRGACYSGVVSRMCSDVRVPKKNKDLHMHMRMHVAGDSFLYSRKRQKRTPEKTVTDYDFFESLPDDLVISIFCKLSSTATKPSDFLNVLITCRRLNKLALHSLVLSKVSPRALAIRAKDWCDSAHRFLKHCADSGNVEACYILGMIRFYCLQNRGSGASLMAKAAINSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSTSAAARHWLTCNLQPQLRQGIGCPLLSDFGCNVPTPEVHPASRFMAEWFAARGGSPGEGLRLCSHAGCGRPESRKHEFRRCSVCGVVNYCSRACQALDWKFRHKAECAPAERWVDEDGEDLGDDDSDGEVMVMADS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02572 391 Gene3D Tetratricopeptide repeat domain 118 306 IPR011990 GO:0005515
Lapu3g02572 391 ProSiteProfiles Zinc finger MYND-type profile. 320 362 IPR002893 -
Lapu3g02572 391 MobiDBLite consensus disorder prediction 371 391 - -
Lapu3g02572 391 Gene3D - 311 367 - -
Lapu3g02572 391 Pfam MYND finger 322 362 IPR002893 -
Lapu3g02572 391 CDD F-box_SF 67 105 - -
Lapu3g02572 391 FunFam Predicted protein 310 367 - -
Lapu3g02572 391 PANTHER MYND DOMAIN-CONTAINING 43 377 IPR044508 -
Lapu3g02572 391 SUPERFAMILY F-box domain 52 117 IPR036047 GO:0005515
Lapu3g02572 391 SUPERFAMILY HCP-like 122 246 - -
Lapu3g02572 391 SUPERFAMILY HIT/MYND zinc finger-like 317 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02572 Lapu-Chr3 48019759 48021782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02572 - - gmx:100798174 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02572 3 48019759 48021782 Lapu3g02572 3 48019759 48021782 ECH