Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02471 ATGAATGGACTGGCAAGTGCCGTAGCTGCCAAGGATCAGGATATGTTAGCTACTATGGCAAGAGAGGGAAAGCGGTTACCTGCAAATGCATTCCTTGCATGGGAATTGGCACAGGAAGATAGCTCTGGTTCAACCAAGGGATGGGCAGTTGTGGCTTCCTGTTACGTGCAGAAGATAACAGGGAATTGGACAAGTTTCCTTGATTTCCAATACAACCTCTCAAGGAGAAAATATTTGAGGAAGCCGTCACGGCTGTTCTCCCGAGAAAGACAGAACTCTGGGCTGAAGAGTGTGTTTCTTCAGCCTAACGCTGATGAGATGAAGCAAGTGTTTGATAAATTTGATTCCAATAAAGATGGGAAAATTTCTCAACAGGAGTACAAAGTCACCATGAAGGCTCTAGGCATGGGGGACTCGGTTCATGAAGTGCCAAATATATTCAAGGTGGTTGATTTGGATGGAGATGGATTCATCAACTTCAAAGAATTTATGGAGGCTCAGAACAAGGGTGGTGGGGTTAGGGCGATGGATATACAGAGTGCCTTTCGGACGTTTGATAGGAATGGTGATGGGAAAATAAGTGCAGAAGAAATTAAAGAAATTCTAGGAAGGCTGGGAGAAAGGTGCACCATCGACGACTGCCGCCGAATGGTGAGAGCTGTGGACACTGATGGTGATGGCATGGTTGACATGGACGAGTTCACCACCATGATGACACATAACCTGAGACATGTTTGA 738 0.458 MNGLASAVAAKDQDMLATMAREGKRLPANAFLAWELAQEDSSGSTKGWAVVASCYVQKITGNWTSFLDFQYNLSRRKYLRKPSRLFSRERQNSGLKSVFLQPNADEMKQVFDKFDSNKDGKISQQEYKVTMKALGMGDSVHEVPNIFKVVDLDGDGFINFKEFMEAQNKGGGVRAMDIQSAFRTFDRNGDGKISAEEIKEILGRLGERCTIDDCRRMVRAVDTDGDGMVDMDEFTTMMTHNLRHV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02471 245 CDD EFh 177 239 IPR002048 GO:0005509
Lapu3g02471 245 ProSitePatterns EF-hand calcium-binding domain. 222 234 IPR018247 -
Lapu3g02471 245 Gene3D - 55 170 - -
Lapu3g02471 245 FunFam calmodulin-like protein 3 172 242 - -
Lapu3g02471 245 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Lapu3g02471 245 ProSiteProfiles EF-hand calcium-binding domain profile. 138 172 IPR002048 GO:0005509
Lapu3g02471 245 ProSiteProfiles EF-hand calcium-binding domain profile. 173 208 IPR002048 GO:0005509
Lapu3g02471 245 Pfam EF-hand domain pair 177 238 IPR002048 GO:0005509
Lapu3g02471 245 Pfam EF-hand domain pair 106 166 IPR002048 GO:0005509
Lapu3g02471 245 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Lapu3g02471 245 ProSiteProfiles EF-hand calcium-binding domain profile. 209 244 IPR002048 GO:0005509
Lapu3g02471 245 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 177 239 - -
Lapu3g02471 245 CDD EFh 106 166 IPR002048 GO:0005509
Lapu3g02471 245 SMART efh_1 177 205 IPR002048 GO:0005509
Lapu3g02471 245 SMART efh_1 142 170 IPR002048 GO:0005509
Lapu3g02471 245 SMART efh_1 213 241 IPR002048 GO:0005509
Lapu3g02471 245 SMART efh_1 106 134 IPR002048 GO:0005509
Lapu3g02471 245 SUPERFAMILY EF-hand 105 240 IPR011992 -
Lapu3g02471 245 ProSitePatterns EF-hand calcium-binding domain. 186 198 IPR018247 -
Lapu3g02471 245 Gene3D - 173 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02471 Lapu-Chr3 46653592 46660730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02471 64 241 EF-hand Containing Proteins AT2G15680 59.890 7.14e-79 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02471 K13448 - gmx:100803158 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02471 3 46653592 46660730 Lapu3g02471 3 46653592 46660730 ECH