Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02467 ATGTTCCCCTGGCGGAATTTTGCCAAATCCGCCGAGGCCACCTTCTCGGGCTGGGCCCTCAAGAGGGTTTGCAAGTTCTTCCTCAAGAAGAAACTCGGCCAGTTCATTCTCGGTGACCTCGACCTCGACCAGCTCGACGTCCAACTCTCCCAGGGAACCATTCAGCTCTCCGATCTCGCTCTCAATGTCGACTTTGTCAACACCAAGTTTGGTAAGACATCATCCGTAATGATCAAAGAAGGTTCAATTGGCTACTTGTTGATTAAAATGCCTTGGAGTGGTAAAGGTTGTGAGGTTGAAGTGAACGGGCTTGAATTAGTAGTTTCTCCTTGCTCCGATAAAATGTCAACAAGTGAAGATGAAACTTGTGGCATGGATAATAGTGATAATCATCACAACAAATACAGCTCAATGAGGACTGAGCACGAAATATCAGATGATGCTGAGAAGTTGGCTTCAATGGATGTTCACGAAGGTGTGAAAACTATTGCAAAAATGATAAAGTGGTTGCTGACAAGCTTCCATGTTACAGTAGCAAATGTAATTGTTGCATTTGATCCATCCTTAGATAATTTAGAAAATAAGATGCATTGTCGTCATACCTTAGTTCTTCAGATTTCTGAAATACAATGTGGAACTAGTCTGTCTGAAGAGGCTGATTCAAATGTTGATGTCCTCGGAATAAGCCAGTTAACAAACTTTGTAAAGTTTCATGGAGCAGCTATTGAGCTTCTCCAAATAGATAATGAGGATTTATACTTTCAGCATGAATCAAGAGCAGGATTTGATGAGCCTGTTTTGGGTTCAAATATAGCAACATGTCCAGTCATGACTGGGAACCAAGGTGGATTTAGTGGAAATATCAAATTAAGTATTCCTTGGAAGAATGGTTCCTTGGACATTTGCAAGGTGGATGCTGATGCTCGTGTTGATCCCATAGTGTTAAGATTTCAACCTAGCACTATTAAATGGCTACTGCAATCATGGGAAACTCTTAAGAATCTGAACAAGGATGGCAAAGGTTGCACAAATCTCGACATAAGAGGATCTGCCCAGTCAAATTCTACAGTGTTACGTCATTCATCCACTTCAACCAATGCTCCCAGTGAGATTATAACTGCCAATGGTAGTTTGTCAGCTGAATACGCATCTTTGATCCAACCTGAAACCCTTGCTGAAAATTTACTTCCTGCGGCTAACCTTATATCTGATTGGGTACCATTGTCTACTCATACAAATCATAATCAAGATGGTATTCAAGAACTTGATTTTGGGGCAAGTGTGGATCAGTTTTTTGAATGTTTTGATGGAATGAGAAATTCTCAATCAGCTTTAGGAAACAGCGGAATGTGGAATTGGACGTATTCAGTTTTTAGTGCTATTACTGCTGCATCAAGCCTTGCTTCTGGATCTTTGCATATTCCATCTGAACAGCAACATATGGAAACCAATCTCAGGGCAACTTTTGCTGGAGTATCTGTTGTTTTGTCTTCCTGTGTTGATGAACAAAATGAATTTTCTGCCACTGAAATTGGTCACATGGTTGGGTTACATATTGACTGTCTTGGTGCAGAGTGCCATGATATTTTTTTTGCTTTGCAGGTATGCCCTCAAGGCATGACTCTTGATGCAAAGGTGAGGCATGTCGAAGTTGCTAATTTTTTGAACATTGGAATTGATGCTAAAAGTCAAACTGTTTTGGTTCAACACCTACAAGCGAAGGTCCTTGATGCTCTCCCTTCATCTACCTCTTACAATGTAGATTCACATTCATTAATTGGGCCTGTTGCGGCAGATTCTCCATTTGGAAATAATGATTGTTTGTTGAAAGTTACATTGTTTAGAACTTCTGGTGACACAAATTGCAAATTTTCAATGCAAACAAGTTCATCTGATGGTTGTCTGATAGGAAAGACATCATTCTCACTGAACTTGCCCCCATTTATTTTTTGGGTAATCTTTTCAGTAATTAATGTGCTCATGAATCTGCTAAAGGAAGTTGAGAAATCACTTGGGATGCATAATAAAAAAAAGGAAATTCCGTCTGAAGCCTCAGATAACAAGTGTGGACTGTCTCAGAGTAATATGAAGGAAGGTTCTAGTTCCTGTGTGACATCTCTCTCCACAACACAATGCTTGCACGGTGATGTATCAATTTCTAATGCAAGAGTGATATTGTGTTTTCCTTTTGGAAGCGACGGGGATCATAACAAATCGTTTCCCTGGGAACAGTTCATTGCTCTTGATTTTACTTCATCATCACCTTTGAACTATGGTTGCACTCCAGATTATAGTCAAAGTTCAAATGCAAGTTCGAAGAAAAGATTTCCTTCAGTATATGCTCAATCTCTTCAATTGAGTTTCTGCGATCTTGACATCTACTTGATCACATCAAGTAATGAGAATGGTAGAATCATCTCCTATGATGTGCAGAATGAGAAATTTTCTGCTAGCTGCGTCTTTTCTATTTTTCATAGAAGAGGATGTTTCTCTGTTTTTCGTGTTGTTTGGCAAGGGGGGCAAGTGACTGGTCCTTGGATTGCTAATAAAGCCAGATTATTTGCTAATTCAGAGCAAACTAGGGGCAAAGATGACACTGGAAGAAGGGGGCACGAATTTGTGTCTGCATCAACAGTGAAAGATCTGGAAGATTGGAAATCTCAAACTCAACAAGAGATGATCTTAAGCTCATCATTTCTGATCCATGTCCATCTCTCTCAACTTGTGATTAATGTGAATTATTCTCAATATAAAGGCATACATCTTCTTCTACAACAAACACTGAATGCATTGACATGTGTGACTTCTAAGGAACCCAATGTTGAAAAGGAATCTTCTGTCTCACAATCATCAGTGTTTTTGGAATGTGATTCTCTTGAAATTCTTATTGATAGGGATACCTCTGAGAGTGCCAAAAGTTCAATCAAAAGTGAACTTCCTGGAATTTGGTGTCAATTCAGGCTGAAGGTTCAAAAGTTTGAGGTGCTGTCGGTCACCAATACTGGTGGCATTAAGGCTGCAAGTTTCTTCCGATTAGCTCATGGTGAAGGCAAGTTGTGGGGGTTTGTCACTGGACTTCCTGATCATGAGTTTCTTCTGATTACTTGTAGCAACTCCTCTGCGAAAAGAGGTGATGGAGGAGGTTCTAATGCATTATCTTCCAAATGTGCTGGTTCTGAAGTCATTTGTCTCTTTGACCCAGAGATTTCCCATACTGTAACATCCATTACAGTCAGTTGTGGTACGGTTATTGCTGTAGGTGGACGTTTGGATTGGTTTGATGCAATATCATCCTTTTTTTGTTTGCCTGCTTCTAATACCAAAGATGTAAGAGATACTAGTATTTCAAAAAAGGAACAGAATGTCTCTTACACAAGTTATTTTGTTCTGTGCTTGATTGATATTGCTTTGAGCTATGAGCCTTATGTGAAGAATCTTGTAGTTCAGAGTGAACTGAATTCAGAGTCTAGCTGTTCATTTATCGAAGAAGATATGAGTGAACATTGTGTTTCCTGTTTGTTGGCTGCATCCAACCTAACTCTTTCAAATTCATCCTCAGCCGACACAGTTGAAAGTGTTTTCCAAATCCGAGTGCATGACTTGGGGCTTCTAATTCATTTAATATCAGAATTGAATTCTCTGTCTGGCATTTATAGTGTTGAACATCTTCAAAAGACAGGTTATGTTAAAGTTGCTCAGGAGGCCTTTATGGAGGCGATTTTGAAAACAAACTGTACAAGTAGTCTTCTCTGGGAACTGGAATTATCTAAATCTCACCTTAATATAGAAACTTGCTATGACACAACTGCTAGTCTAATTGGTTTGGCTGCTCAACTTCAAAAATTATTTGCCCCTGATGTGCAGGAATCTATTGTGCATTTGCAGAACAGGTGGCATAATGTTCAACAGGCACAGCAAAGGAATGAACTTAAAATTGAAAATAAGAATCTCAGATTTGACTCAATGTCTGCAATTTCTGAACAATGCTCCCCTTCAACATTTTCAACGGATGGATCTAGTATATCTGGCTGGATGGATGAAATATGTGAAGATGCATTTAAAGTAAATAGCAATAATGCTCCCCAATCTTATCCTTTTGAATCAGGGAGGATTCCACTTGATGGAAGCTTAATTGAGGTTGGTCAAATGAATTTGCATAAGCCTGAAGTTGTATCTCATGAATTAACTTTGACTGAGCCAGTGCGTGTGCTAGGACCTGAAGGTAGTGATACTTCGATTCTGCAAGAGGGTTGTTTTCCAGAGATTATAGAAAGCTATTGTTTGTCTGACTTACGCCCTCTGTCGGAGCTATCTTTAGGTATTCATTGTGATGAGCTTTCTAGACACAAACTGAGGAATGTGGAACATAGAGAGATTGAAAGAGCAAGTGGTAGATGGTACAGAGGCACCTCTCTGAAAGTACTAGAAAACCACATTGCAGAGGAAAGCAAACCACCTGGACCGACAAAGACTGTAGATCATCGAGGCACACTTTCATCTGATGATAGTTCATTACATGGTGAGACTTGTGGACGTGTAGTTCTTAAGAAAATTGATATAAGATGGAGAATGTATGGTGGTTCTGACTGGCTTGACTCTGAGAAAAGTGGGCAGCACTCTGGTAGAGACACATCTCTTTGCTTGGAACTTGCATTGTCTGGGATGAAATTTCAGTATGATATATTTCCAGTTGGTGGACTACATGTATCTAAAATTTCTGTGTCTGTTCAAGATTTTTATCTGTATGACAGAAGCCATGATGCACCTTGGAAGCTGGTATTAGGACATTATCACTCAAAAGGTCATCCTAGGGAGTCTTTTTCGAAAGCATTTAAATTGGACTTGGATGCAGTGAGACCAGATCCTCTTACTCCCCTTGAGGAGTACAGGTTAAATGTTGCTATTTTGCCTCTGCTGTTACATCTTCATCAAAGTCAGCTTGATTTTTTTGTTGATTTCTTTGGGAGAAAAAACACATTGAAGGATCAGTTTCCTAATAGTTCTCAAGATTTGGAGGGATCAAAATCATTGCCTGAGAAGACTAAGAAAAATAAAGATCATGTATTTCATTCAATTGCACCAGAGGCGCTGCTTCCCTACTTCCAGAAGCTAGATATATGGCCTATTCTTGTTCGGGTGGATTACAGTCCAAATCGTGTAGATCTAGCAGCCTTAAGACATGGAAAGTATGTAGAGCTTGTAAATCTTTTCCCTTGGAAGGGGGTTGAGCTTAACCTGAAACATGTTCATGCTTCTGGCGTCTATGGTTGGGCCAGCGTTTGTGAAACTACGGCAGGGGAGTGGTTGGAAGATATATCTCAGAATCAGATTCGTAAAATACTCCAGGGGCTTCCTACTGTACGATCATTGATTGCAGTTGGGGCTGGTGCTGCTAAGCTGGTTTCATCACCAGTAGAGAGCTACAAGAAGGAACGGAGAGTGCTCAAGGGTGTGCAGAGAGGTACAATTGCTTTTCTCCGAAGCATTTCTCTTGAAGCTGTTGGACTTGGAGTTCATCTAGCTGCTGGAGCCCATGACATTCTCCTCCTAGCAGAATATATTCTTTCAAGCACACCTTCTCAAGTTCCACTGCCTGCCAAAGACAAATCAAAAACAGATGTTCGATCCAATCAACCTAAAGGTGCCCAAGAAGGAATTCAACAGGCTTATGAGAGTCTTAGTGATGGCTTGGGAAAATCTGCTGCTGTGTTAGTTCAGAACCCCTTAAAAAAATTTCAGCGAGGTTCAGGTGCTGGACCTGCCTTGGCTGCTGCTGTTCGAGCAGTGCCTGCTGCTGCCATTGCCCCCGCTTCAGCTTGTGCAAGTGCTGTACACTATGCTCTTCTTGGATTCAGAAATAGCCTAGATCCAGAACGTAAAAAGGAGTCCATGGAGAAATATTGTCCAGCACAACTCTGGGAAGAAGACTGA 5931 0.4052 MFPWRNFAKSAEATFSGWALKRVCKFFLKKKLGQFILGDLDLDQLDVQLSQGTIQLSDLALNVDFVNTKFGKTSSVMIKEGSIGYLLIKMPWSGKGCEVEVNGLELVVSPCSDKMSTSEDETCGMDNSDNHHNKYSSMRTEHEISDDAEKLASMDVHEGVKTIAKMIKWLLTSFHVTVANVIVAFDPSLDNLENKMHCRHTLVLQISEIQCGTSLSEEADSNVDVLGISQLTNFVKFHGAAIELLQIDNEDLYFQHESRAGFDEPVLGSNIATCPVMTGNQGGFSGNIKLSIPWKNGSLDICKVDADARVDPIVLRFQPSTIKWLLQSWETLKNLNKDGKGCTNLDIRGSAQSNSTVLRHSSTSTNAPSEIITANGSLSAEYASLIQPETLAENLLPAANLISDWVPLSTHTNHNQDGIQELDFGASVDQFFECFDGMRNSQSALGNSGMWNWTYSVFSAITAASSLASGSLHIPSEQQHMETNLRATFAGVSVVLSSCVDEQNEFSATEIGHMVGLHIDCLGAECHDIFFALQVCPQGMTLDAKVRHVEVANFLNIGIDAKSQTVLVQHLQAKVLDALPSSTSYNVDSHSLIGPVAADSPFGNNDCLLKVTLFRTSGDTNCKFSMQTSSSDGCLIGKTSFSLNLPPFIFWVIFSVINVLMNLLKEVEKSLGMHNKKKEIPSEASDNKCGLSQSNMKEGSSSCVTSLSTTQCLHGDVSISNARVILCFPFGSDGDHNKSFPWEQFIALDFTSSSPLNYGCTPDYSQSSNASSKKRFPSVYAQSLQLSFCDLDIYLITSSNENGRIISYDVQNEKFSASCVFSIFHRRGCFSVFRVVWQGGQVTGPWIANKARLFANSEQTRGKDDTGRRGHEFVSASTVKDLEDWKSQTQQEMILSSSFLIHVHLSQLVINVNYSQYKGIHLLLQQTLNALTCVTSKEPNVEKESSVSQSSVFLECDSLEILIDRDTSESAKSSIKSELPGIWCQFRLKVQKFEVLSVTNTGGIKAASFFRLAHGEGKLWGFVTGLPDHEFLLITCSNSSAKRGDGGGSNALSSKCAGSEVICLFDPEISHTVTSITVSCGTVIAVGGRLDWFDAISSFFCLPASNTKDVRDTSISKKEQNVSYTSYFVLCLIDIALSYEPYVKNLVVQSELNSESSCSFIEEDMSEHCVSCLLAASNLTLSNSSSADTVESVFQIRVHDLGLLIHLISELNSLSGIYSVEHLQKTGYVKVAQEAFMEAILKTNCTSSLLWELELSKSHLNIETCYDTTASLIGLAAQLQKLFAPDVQESIVHLQNRWHNVQQAQQRNELKIENKNLRFDSMSAISEQCSPSTFSTDGSSISGWMDEICEDAFKVNSNNAPQSYPFESGRIPLDGSLIEVGQMNLHKPEVVSHELTLTEPVRVLGPEGSDTSILQEGCFPEIIESYCLSDLRPLSELSLGIHCDELSRHKLRNVEHREIERASGRWYRGTSLKVLENHIAEESKPPGPTKTVDHRGTLSSDDSSLHGETCGRVVLKKIDIRWRMYGGSDWLDSEKSGQHSGRDTSLCLELALSGMKFQYDIFPVGGLHVSKISVSVQDFYLYDRSHDAPWKLVLGHYHSKGHPRESFSKAFKLDLDAVRPDPLTPLEEYRLNVAILPLLLHLHQSQLDFFVDFFGRKNTLKDQFPNSSQDLEGSKSLPEKTKKNKDHVFHSIAPEALLPYFQKLDIWPILVRVDYSPNRVDLAALRHGKYVELVNLFPWKGVELNLKHVHASGVYGWASVCETTAGEWLEDISQNQIRKILQGLPTVRSLIAVGAGAAKLVSSPVESYKKERRVLKGVQRGTIAFLRSISLEAVGLGVHLAAGAHDILLLAEYILSSTPSQVPLPAKDKSKTDVRSNQPKGAQEGIQQAYESLSDGLGKSAAVLVQNPLKKFQRGSGAGPALAAAVRAVPAAAIAPASACASAVHYALLGFRNSLDPERKKESMEKYCPAQLWEED* 1977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02467 1976 Pfam N-terminal region of Chorein or VPS13 20 121 IPR026854 -
Lapu3g02467 1976 PANTHER AUTOPHAGY-RELATED 2, ISOFORM A 1 1967 IPR026849 GO:0006914
Lapu3g02467 1976 Pfam Autophagy-related protein 2 CAD motif 1215 1285 IPR026885 -
Lapu3g02467 1976 MobiDBLite consensus disorder prediction 1480 1504 - -
Lapu3g02467 1976 Pfam Autophagy-related protein C terminal domain 1874 1967 IPR015412 -
Lapu3g02467 1976 MobiDBLite consensus disorder prediction 1862 1883 - -
Lapu3g02467 1976 MobiDBLite consensus disorder prediction 124 142 - -
Lapu3g02467 1976 MobiDBLite consensus disorder prediction 118 142 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02467 K17906 - gmx:100805552 3318.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02467 3 46610677 46622667 Lapu3g02467 3 46610677 46622667 ECH