Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02466 ATGTTTGTGAAATGTGATGTGACTAATGCAAGGGATTTAGCTGCTGCATTTGAAAAGCACTTTTTGACATATGGAGGTCTAGACATTTGTATTAACAGTGCCGGAATTAGTAGTCCTATACCATTCCGAAAGGATCAAACGGATGGCACTCAAACATGGAGGCAGACTGTTGATGTGAATTTCACTGCTGTTATTGATTCCACTCGCCTTGCGATTAAAGTCATGGAAGCTGCCAAAAGACCTGGTGTGATTATCAACTTGGGTTCTGCTTCCGGTCTTTATCCAATGTTCGTTGACCCAATCTACAGTGGCTCTAAAGGTGGTGTTGTTATGTTTTCTAGATCTCTTCGTCCATACAATCGTAAAGGAATTCGAGTTAATGTGCTTTGCCCCGAGTTCGTTGAAACTGAGATGGGATTAAAGATAGATCCCAATATTATCAACTTGATGGGGGGCTTTGTACCTATGGAAATGGTGGTGAAAGGTGCCTTTGAGCTCATTACGGATGAGAGTAAAGCTGGTCATTGCCAATGGATTACAAATCGTCGGGGTATTGAGTACTGGCCCACAGCATCTGAAGAAGCGAAGTACTTAATACGTTCCTCTCGTTTCAAGAGAAGATCCGATTTCAAAGCTCCACCAATTAAACTTCCTGAGAGTTTTGAGAAAATAGTTGTTCACACCTTGACTCATAACTTTCGGAATGCAACAAGCATAGTGAGAACACCATTGAGATTACCTATCAAGCCGAAACACGTTCTTGTTAAGATAATTTATGCTGGTGTGAATGCTAGTGATGTAAATTTTAGCTCAGGCCGCTATTTTGGCGGAAACAACAATGATACTGCTTCTCGTCTTCCATTTGATGCAGGATTTGAGGCTGTAGGAATAATTGCAGCAGTTGGGGATTCTGTCACTGACCTGAAAATTGGTATGCCTTGCGCATTCATGACTTTTGGAGGCTATGCTGAATTCTTAATGATTCCTTCAAAACATGCCCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTGGCCATGCTTACATCAGGATTAACAGCCTCAATTGCATTAGAAAAGGCAGGACAGATGGAATCTGGGAAAGTGGTCCTTGTAACTGCTGCGGCTGGAGGAACTGGACAATTTGCTGTTCAGGTAGCAAAATTAGCAGGAAATAGGGTGGTTGCAACTTGTGGTGGTGGGGCAAAGGCCAAGCTTCTGAAGGAGTTGGGAGTTGACAGAGTCATAGACTATCATAATGAAGATATAAAAACTGTTTTGAGGGAAGAGTTCCCAAAAGGTATTGACATCATCTATGAGTCTGTTGGCGGTGACATGTTAAACTTGAGCTTGAATGCTTTGGCAGTTCATGGACGACTCATTATTATTGGCATGATTTCTCAGTATCAAGGAGAAAAGGGTTGGACACCATCAAAATACCCTGGCCTATGTGAGAAGCTCTTAGCAAAGAGCCAAACTGTGGCTGGCTTTTTCCTGGTGCAATATGGTCACTTGTGGCAAGAACATCTTGACAAGCTATTTAATCTTCACTCTACGGGAAAGCTAAAGGTTGCTATTGATCCAAAGAGATTTATAGGCCTGCATTCTGTTGCTGACGCTGTTGAGTACCTCCATTCGGGCAAAAGTGTTGGAAAGGTTGTCGTCTCCGTGGACCCAAACTTCCTTCCTCCAGTGGCCAAATTGTGA 1704 0.4296 MFVKCDVTNARDLAAAFEKHFLTYGGLDICINSAGISSPIPFRKDQTDGTQTWRQTVDVNFTAVIDSTRLAIKVMEAAKRPGVIINLGSASGLYPMFVDPIYSGSKGGVVMFSRSLRPYNRKGIRVNVLCPEFVETEMGLKIDPNIINLMGGFVPMEMVVKGAFELITDESKAGHCQWITNRRGIEYWPTASEEAKYLIRSSRFKRRSDFKAPPIKLPESFEKIVVHTLTHNFRNATSIVRTPLRLPIKPKHVLVKIIYAGVNASDVNFSSGRYFGGNNNDTASRLPFDAGFEAVGIIAAVGDSVTDLKIGMPCAFMTFGGYAEFLMIPSKHALPVPRPDPEVVAMLTSGLTASIALEKAGQMESGKVVLVTAAAGGTGQFAVQVAKLAGNRVVATCGGGAKAKLLKELGVDRVIDYHNEDIKTVLREEFPKGIDIIYESVGGDMLNLSLNALAVHGRLIIIGMISQYQGEKGWTPSKYPGLCEKLLAKSQTVAGFFLVQYGHLWQEHLDKLFNLHSTGKLKVAIDPKRFIGLHSVADAVEYLHSGKSVGKVVVSVDPNFLPPVAKL* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02466 567 Gene3D - 345 523 - -
Lapu3g02466 567 FunFam Prostaglandin reductase 2 345 523 - -
Lapu3g02466 567 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 89 117 IPR020904 GO:0016491
Lapu3g02466 567 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 366 387 IPR002364 GO:0008270|GO:0016491
Lapu3g02466 567 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 198 IPR036291 -
Lapu3g02466 567 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 218 555 - -
Lapu3g02466 567 Pfam short chain dehydrogenase 2 142 IPR002347 -
Lapu3g02466 567 Gene3D - 1 199 - -
Lapu3g02466 567 Pfam Zinc-binding dehydrogenase 377 511 IPR013149 -
Lapu3g02466 567 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 342 520 IPR036291 -
Lapu3g02466 567 Pfam Alcohol dehydrogenase GroES-like domain 251 315 IPR013154 -
Lapu3g02466 567 CDD Mgc45594_like 220 544 - -
Lapu3g02466 567 PRINTS Glucose/ribitol dehydrogenase family signature 25 36 IPR002347 -
Lapu3g02466 567 PRINTS Glucose/ribitol dehydrogenase family signature 122 139 IPR002347 -
Lapu3g02466 567 PRINTS Glucose/ribitol dehydrogenase family signature 76 92 IPR002347 -
Lapu3g02466 567 PRINTS Glucose/ribitol dehydrogenase family signature 102 121 IPR002347 -
Lapu3g02466 567 SMART PKS_ER_names_mod 228 554 IPR020843 GO:0016491
Lapu3g02466 567 SUPERFAMILY GroES-like 231 370 IPR011032 -
Lapu3g02466 567 Gene3D - 226 554 - -
Lapu3g02466 567 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 90 IPR002347 -
Lapu3g02466 567 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 102 121 IPR002347 -
Lapu3g02466 567 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 25 36 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02466 Lapu-Chr3 46583599 46597049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02466 6 156 Acyl Lipid Metabolism Gene Families AT1G24360 31.373 5.63e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02466 - - gmx:100797559 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02466 3 46583599 46597049 Lapu3g02466 3 46583599 46597049 ECH