Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02450 ATGGCACAGATGCAACCTGAACAGAAGATCCATGAGAACCCAGAAAAGGACACCCACGAAACAGGCAACTCCAGCTTCAAATTCAATGCCCAAGCGCCCGAATTCGTCCCAAGATCGCAATCCCAGATGCCCATTTCGGGTTATTTCTATCCCTGTTTCCAGATTCTCGGTGGCTGTGGTGATTCTGATTGGTTCTTTGTTGGGGACCAGGATCCTTCTTGTTTGATCCCCACCGCCAGTGTTGCGCTACCCAATTCCTCCAAGAATATCCTTACCCCTGATCTTCAACAAAAGATCGTCAAACAGGTGGAATATCAGTTCAGTGACATGAGTTTGTTAGCAAATGAATCTTTCCAGAAACAGATCAATAAAGATCCTGAAGGATATGTTCCAATAACCGTGATTTCTTCTACTAAAAAGGTTAAATCCCTCGTTAATAACATTCATATACTTACCCAAGCTATCCGTTCATCTTCAAAACTTGTTTTGAGCGCTGATGGCAAGAAGGTTAAACGCAAACATCCTTTCACTGATAAGGAAAAAGAGGATTTGCAGTCTCGCACTGTTGTTGCAGAGAATTTACCTGACGATCATTCCCATCAGAATCTTCAGAAAATATTTAGTACAGTTGGGAGCGTGAAAACGATTAGAATATGCCATCCTCAGGAGCCTAATACTTCTCGCCCAAAGTCTGATTTCTTCGTTAGTAACAAGCTCCATGCACTTGTGGAGTATGAGACATCAGATATAGCTGACAAAGCTGTTGAGAAGTTAAATGATGAAAGGAATTGGAGGAAAGGTATGCGAGTAAGGCTGCTGCTAAGATGCTCGCCCAAATCTGTTCTGAAGTCTAGAAAGTCTGAATTTGATGGATATCTAGAAGATGATGAGGTTCTAAATTCTGAAACAGCTGAGGATTCTTCTCACTCAAACAATGCTGAATTGCTTGATACAAATGTTGATGAAAACTCAGTAGGATCTAATAAGAAAGGATGGGCTAGAGGACGTGGAAAGGGGAGAGGACGCACTCAAGGACGTGGCCTGCTTGCCCCACCATCTCAATCAAGCATCACTGTTCTGTGTGATGCTCATACTAAACCCATTACCAAGGGTCCCAGAATGCCAGATGGGACAAGAGGCTTTGCCATGGGACGTGGAAAGCCAATTAGTCCTCCTGCTCTAGTCGCCTCATCTCAAGAGTGA 1203 0.4356 MAQMQPEQKIHENPEKDTHETGNSSFKFNAQAPEFVPRSQSQMPISGYFYPCFQILGGCGDSDWFFVGDQDPSCLIPTASVALPNSSKNILTPDLQQKIVKQVEYQFSDMSLLANESFQKQINKDPEGYVPITVISSTKKVKSLVNNIHILTQAIRSSSKLVLSADGKKVKRKHPFTDKEKEDLQSRTVVAENLPDDHSHQNLQKIFSTVGSVKTIRICHPQEPNTSRPKSDFFVSNKLHALVEYETSDIADKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKSRKSEFDGYLEDDEVLNSETAEDSSHSNNAELLDTNVDENSVGSNKKGWARGRGKGRGRTQGRGLLAPPSQSSITVLCDAHTKPITKGPRMPDGTRGFAMGRGKPISPPALVASSQE* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02450 400 Pfam La domain 99 156 IPR006630 -
Lapu3g02450 400 MobiDBLite consensus disorder prediction 304 326 - -
Lapu3g02450 400 Gene3D - 178 280 IPR012677 -
Lapu3g02450 400 Gene3D - 92 177 IPR036388 -
Lapu3g02450 400 CDD RRM_La_like_plant 187 274 IPR034878 GO:0003723
Lapu3g02450 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 272 IPR000504 GO:0003723
Lapu3g02450 400 SUPERFAMILY "Winged helix" DNA-binding domain 91 176 IPR036390 -
Lapu3g02450 400 ProSiteProfiles La-type HTH domain profile. 89 180 IPR006630 -
Lapu3g02450 400 SUPERFAMILY RNA-binding domain, RBD 172 273 IPR035979 GO:0003676
Lapu3g02450 400 SMART rrm1_1 188 273 IPR000504 GO:0003723
Lapu3g02450 400 PANTHER LUPUS LA PROTEIN-RELATED 33 347 IPR045180 -
Lapu3g02450 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 260 IPR000504 GO:0003723
Lapu3g02450 400 PRINTS Lupus La protein signature 128 143 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lapu3g02450 400 PRINTS Lupus La protein signature 102 119 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lapu3g02450 400 PRINTS Lupus La protein signature 159 172 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lapu3g02450 400 PRINTS Lupus La protein signature 181 197 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lapu3g02450 400 SMART la 93 173 IPR006630 -
Lapu3g02450 400 MobiDBLite consensus disorder prediction 301 354 - -
Lapu3g02450 400 MobiDBLite consensus disorder prediction 366 400 - -
Lapu3g02450 400 Pfam Ataxin-2 C-terminal region 24 40 IPR009818 -
Lapu3g02450 400 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02450 Lapu-Chr3 46351483 46354253 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02450 K15191 - gmx:100796786 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02450 3 46351483 46354253 Lapu3g02450 3 46351483 46354253 ECH