Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02108 ATGTCGATGGTGCTGAGGAAAAGACTGAGTTGTTGCTCAAAGGAAACCAAAATCAGCATTGATTTTGATGTGCCAGAGAGTATTGTGACATATAATGGCCTTGACAGTTGCCCTTCGGATAATCGTTCTTACGGAAATGAAAGCAGAACTAGTAGAGGAGATGGATGTATAACTGATTCCTTTAATGACGATGACTCCAGCTGTTGTTCATCCAGTAAAGATGCTTTTGGATCGTTCTCTTCAAAATGTTTGACAATGAAAAGAGATGAACAAGGATTAGAAGAGTGGGAACTCCCAGAAAGTCCTCCAAATTTTTATCTTAAAGACAAGTCTGCTTTTGACGTCCAAAATTCAGATGTAGAAGCCATGAAGGAGAAGTTTGCAAAGCTGTTGCTAGGTGGTGATATTACTGGAGGATCACAAGGCCTCAGTACAGCTTTAGCACTGTCTACTGCTATCACAAGCCTTGCAGTGACGGTTTTTGGTGAGTTGTGGAAATTGGAACCACTATCTGAAGAAAGGAAGAACAAATGGCAAAGAGAAATGGGATGGTTGTTGTTTCCAACTAACTATATGGTTGAGTTGGTTCCTGCTAAACAAAATGGTGCCAATGGTGGGATCTTTGAGATTATGACCCCAAAAGCCCGTGCTGACATCCAAATGAATCTTCCAGCACTTCAGAAGCTGGACTCTATGCTCATTGAGACACTAGACTCAATGGTGAATACTGAGTTTTGGTATGCAGAGGAAGGAAGCCGGTCAGAGGGGAGGAACACAACTGGAAGACAAAGCAAAAGATGGTGGCTTCCATCACCCCGAGTACCAAGAACTGGACTTTCTGAAGTTGAAAGAAAGAGGTTGCTTAATCAGGGAAGGATAGTACATCAAATATTCAAGGCTGCCAAAGCTATCAATGATAACATGTTGCAAGAGATACCCGTGCCAGCAATGATTAAGGATGCACTTCTTAAGTCTGGAAAGGCAAGCCTGGGAGAGGAACTGCACAAGGTTTTAGTGACTGAATCGAGTTCTGGAGAAGAAATGCTTAAAGCTCTCAATTTGAAATCTGAACATGATGTCCTAGAGACCGTTAATAAATTGGAAGCTGCTACATTTTCATGGAAAGAAAGAATCATACAAGAAAATAGTGGCAAATCCCCGGTTCGACCCTCGTGGTCCTTCCTGAAGGACCCTGTGTCAGGTATAGATAAGATGGAACTGTTGTTGGAACGTGCAGAAGCACTTCTAAGTCTGCTTAAAATCAGACATCCAAACCTTCCTCAAACATTTCTGGATGCTGCAAAAGTTCAATATGGCAAGGATATTGGGCATTCCATATTGGAAGCATACTCTAGAGTTCTTGGAAGTTTAGCCTTTAGCATACTCTCTAGAATTGGAGATATATTGCAGGAGGATGCTTTAAGCAATCCCAATTCACCTATCTCATTAAGTCACTCTCCTGGGACAAATCTCTCTGAAGCTTGGGTGGTTGGTTCACGTATCAGACACTCTTTAATAGACAAGATGAATGAGGCAGATGGAGAATATTGTGGTTCTAGTTGTGGCAGTACTTCTGACATAGAACTCTCATCTACAGAGGCCAGTGCCAACGTTGTAACTGCCACCCCAAGCCGTGGTCGATTGTGGTGCATGGGTAGAAACTTGTAG 1668 0.4245 MSMVLRKRLSCCSKETKISIDFDVPESIVTYNGLDSCPSDNRSYGNESRTSRGDGCITDSFNDDDSSCCSSSKDAFGSFSSKCLTMKRDEQGLEEWELPESPPNFYLKDKSAFDVQNSDVEAMKEKFAKLLLGGDITGGSQGLSTALALSTAITSLAVTVFGELWKLEPLSEERKNKWQREMGWLLFPTNYMVELVPAKQNGANGGIFEIMTPKARADIQMNLPALQKLDSMLIETLDSMVNTEFWYAEEGSRSEGRNTTGRQSKRWWLPSPRVPRTGLSEVERKRLLNQGRIVHQIFKAAKAINDNMLQEIPVPAMIKDALLKSGKASLGEELHKVLVTESSSGEEMLKALNLKSEHDVLETVNKLEAATFSWKERIIQENSGKSPVRPSWSFLKDPVSGIDKMELLLERAEALLSLLKIRHPNLPQTFLDAAKVQYGKDIGHSILEAYSRVLGSLAFSILSRIGDILQEDALSNPNSPISLSHSPGTNLSEAWVVGSRIRHSLIDKMNEADGEYCGSSCGSTSDIELSSTEASANVVTATPSRGRLWCMGRNL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02108 555 Gene3D PRONE domain, subdomain 1 399 481 - -
Lapu3g02108 555 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 118 476 IPR005512 GO:0005085
Lapu3g02108 555 ProSiteProfiles PRONE domain profile. 110 482 IPR005512 GO:0005085
Lapu3g02108 555 Gene3D PRONE domain, subdomain 1 112 351 - -
Lapu3g02108 555 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 41 493 IPR038937 GO:0005085
Lapu3g02108 555 FunFam Rop guanine nucleotide exchange factor 14 112 343 - -
Lapu3g02108 555 Coils Coil 402 422 - -
Lapu3g02108 555 FunFam Rop guanine nucleotide exchange factor 14 345 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02108 Lapu-Chr3 40914532 40921141 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02108 - - var:108332640 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02108 3 40914532 40921141 Lapu3g02108 3 40914532 40921141 ECH
Lapu3g02108 3 40914532 40921141 Lapu3g02108 3 40914532 40921141 PCT