Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01718 ATGTTGAGGAATTCCCTGACAAGGAGTAGGAGAAGAAGCAGCAGCAAGGTCATGTCGATTGAAATCGAGGATATCCGCGATGCTGAAGAATCCAAAGCCGTTGATGAGTTCCGTCAGGCTCTTGTCTTGGAAGAGCTACTCCCAGAGAAGCACGATGATTATCACATGATGCTCAGGTTCCTTAAGGCCAGGAAATTTGACCTTGAGAAATCTAAGCAAATGTGGTCTGACATGCTTCAATGGAGGAGGGAATTTGGTGTTGACACCATCAGTGAGGATTTTGACTTCAAGGAACTCGATGAAGTCTTGCAATATTATCCTCATGGACATCACGGAGTTGATAAAGATGGGCGACCTGTGTACATCGAGAGATTGGGCCAAGTCGATGCTACCAAGTTGATGCAAGTCACAACCATGGACCGCTATATCAAATACCATGTCAAGGAGTTCGAGAGGACATTTGATGTGAAATTCGCAGCTTGCTCCATTGCTGCAAAGAAACACATCGATCAAAGTACAACCATCCTTGATGTGCAAGGAGTGGGCCTTAAGAACTTCAACAAGCATGCCAGGGAGCTCATCACAAGCCTTCAAAAGATTGACGGCGACAACTATCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAGCACTGTTAAATCCTTCCTTGACCCAAAAACCACATCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATGATTGATGAGAGTGAGTTGCCAGAGTTTTTGGGAGGCAAATGTACTTGTGCCGATCAAGGAGGCTGCATGCGCTCTGATAAGGGCCCTTGGAAGGATGAGGAAATAATGAAGATGGTTCAAAATGGTGAGCACAAATGTTCAAGGAAATGTGAGGTTCCAGTCATGGAAGAGAAGACAACTTCTGAGGAACACGAGATTATCAAGTCGGAGGCAAATCTCACTACACAATTGTCTTCTGTCTTTGCTGAGGTCGCTGCTACCAAGACTTACAACTACGAGGACTTTGTCCCCGCGGCTGAAAAAACTGCTTGGAAAAAGGTGGAAGACAGTGAAAAATATGCAGTATCCAAAGCTGGAGCTGATGCATACGCCATGGTTGATTCGTTCAAGATTCACGAGAAAGTGAACTCACAAATCTTCACTGGCGTGATGGCCTTTGTGATGGGCATAGTGACCATGGTGAGGATGACCAGGAACATGCCCAAGAAGCTCACAGACGCCAACTTCTACTCCAACTTGGGTGGTGACTACAAGGGTCAGGCCAACAACGACCAAATGACCATGCCTGCCATCTCTGCTCAAGAATTCATGACTGTGATGAAGCGCATGGCTGAGTTGGAAGAGAAAATGAGCAACATGAACAACCTCTCCATCTGCATGCCACCTGAGAAGGAGGAAATGCTCAATGCTGCTATCACCCGAGCAGATACTTTGGAGCAAGAACTCATGGCCACCAAAAAGGCTTTGGAGGACTCCCTTTCCAAGCAAGAAGAGCTTTCGGCTTATGTTGAAAAGAAGAAGAAGAAGAAGAAGTTGTTCGGCTGGTAA 1590 0.4572 MLRNSLTRSRRRSSSKVMSIEIEDIRDAEESKAVDEFRQALVLEELLPEKHDDYHMMLRFLKARKFDLEKSKQMWSDMLQWRREFGVDTISEDFDFKELDEVLQYYPHGHHGVDKDGRPVYIERLGQVDATKLMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKHARELITSLQKIDGDNYPETLNRMFIINAGSGFRMLWSTVKSFLDPKTTSKIHVLGNKYQSKLLEMIDESELPEFLGGKCTCADQGGCMRSDKGPWKDEEIMKMVQNGEHKCSRKCEVPVMEEKTTSEEHEIIKSEANLTTQLSSVFAEVAATKTYNYEDFVPAAEKTAWKKVEDSEKYAVSKAGADAYAMVDSFKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKKLTDANFYSNLGGDYKGQANNDQMTMPAISAQEFMTVMKRMAELEEKMSNMNNLSICMPPEKEEMLNAAITRADTLEQELMATKKALEDSLSKQEELSAYVEKKKKKKKLFGW* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01718 529 CDD SEC14 99 267 IPR001251 -
Lapu3g01718 529 SUPERFAMILY CRAL/TRIO domain 98 294 IPR036865 -
Lapu3g01718 529 Pfam CRAL/TRIO domain 104 266 IPR001251 -
Lapu3g01718 529 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 98 272 IPR001251 -
Lapu3g01718 529 FunFam SEC14 cytosolic factor 86 298 - -
Lapu3g01718 529 Pfam CRAL/TRIO, N-terminal domain 35 77 IPR011074 -
Lapu3g01718 529 Coils Coil 450 470 - -
Lapu3g01718 529 SMART sec14_4 98 269 IPR001251 -
Lapu3g01718 529 SUPERFAMILY CRAL/TRIO N-terminal domain 27 94 IPR036273 -
Lapu3g01718 529 SMART CRAL_TRIO_N_2 53 78 IPR011074 -
Lapu3g01718 529 Gene3D - 86 298 IPR036865 -
Lapu3g01718 529 PRINTS Cellular retinaldehyde-binding protein signature 56 78 - -
Lapu3g01718 529 PRINTS Cellular retinaldehyde-binding protein signature 225 244 - -
Lapu3g01718 529 Gene3D - 10 85 - -
Lapu3g01718 529 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 2 521 - -
Lapu3g01718 529 Coils Coil 482 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01718 Lapu-Chr3 27042677 27046443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01718 32 263 Acyl Lipid Metabolism Gene Families AT5G47730 29.046 1.95e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01718 K26544 - gmx:100785716 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01718 3 27042677 27046443 Lapu3g01718 3 27042677 27046443 ECH