Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01618 ATGGCTACCGATAGAATTTTGAAGCCATCCAAGTGGTTCTCCGGCAAAACTCTTAGGTTAAGTCTTCATTTCCGAAGATCAAGATCCTCCAACTCATCATCACAATCGTCAAGTGCTTCTCCAAGATCCCCCATGTCAATATGCACAACCCCAAAGAAGGAAGAGACGAACGGGCTCATGGAAGCTTTTCGTCACTTGGATGGAGATGGAGATGGGAAAATCTCTGCCTATGAGCTAAGGTCGTATTTTGGGTCCATTGGGGAGCACATGTCTCATGAGGAGGTTGAAGGGGTGATCCATGACCTGGATTCCGATGGGGATAACATGTTGGACTTCCAGGATTTCACCAAGCTGATGAAGAGGGATGGTGGTGATGGCGACGAGGGCGATCTAAGAAAGGCCTTTGAGATGTTTGTGTGGGAGAAAGAAGGGTGTGGTTGCATCACCCCAAAGGGCTTGCAGAGGATGTTGCACCGTCTTGGAGATGACAAGTCCTATGATGAGTGTGTGGCCATGATTGGTGCCTTTGACATTGATCACAACGGTGTTCTTGATTTCGATGAGTTTTACCAAATGATGGCTTAG 585 0.4752 MATDRILKPSKWFSGKTLRLSLHFRRSRSSNSSSQSSSASPRSPMSICTTPKKEETNGLMEAFRHLDGDGDGKISAYELRSYFGSIGEHMSHEEVEGVIHDLDSDGDNMLDFQDFTKLMKRDGGDGDEGDLRKAFEMFVWEKEGCGCITPKGLQRMLHRLGDDKSYDECVAMIGAFDIDHNGVLDFDEFYQMMA* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01618 194 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Lapu3g01618 194 FunFam Calmodulin-2 A 49 194 - -
Lapu3g01618 194 Pfam EF-hand domain pair 146 193 IPR002048 GO:0005509
Lapu3g01618 194 ProSiteProfiles EF-hand calcium-binding domain profile. 90 125 IPR002048 GO:0005509
Lapu3g01618 194 SUPERFAMILY EF-hand 42 193 IPR011992 -
Lapu3g01618 194 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Lapu3g01618 194 Pfam EF-hand domain pair 59 120 IPR002048 GO:0005509
Lapu3g01618 194 Gene3D - 25 123 - -
Lapu3g01618 194 SMART efh_1 168 194 IPR002048 GO:0005509
Lapu3g01618 194 SMART efh_1 94 122 IPR002048 GO:0005509
Lapu3g01618 194 SMART efh_1 58 86 IPR002048 GO:0005509
Lapu3g01618 194 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Lapu3g01618 194 MobiDBLite consensus disorder prediction 24 51 - -
Lapu3g01618 194 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Lapu3g01618 194 ProSiteProfiles EF-hand calcium-binding domain profile. 164 194 IPR002048 GO:0005509
Lapu3g01618 194 CDD EFh 131 194 IPR002048 GO:0005509
Lapu3g01618 194 PANTHER CALCIUM BINDING PROTEIN 109 193 - -
Lapu3g01618 194 CDD EFh 59 120 IPR002048 GO:0005509
Lapu3g01618 194 Gene3D - 124 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01618 Lapu-Chr3 20480340 20480924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01618 1 194 EF-hand Containing Proteins AT3G50770 51.942 1.55e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01618 K13448 - gmx:100306370 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01618 3 20480340 20480924 Lapu3g01618 3 20480340 20480924 ECH