Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01388 ATGGCTTTAACCCTTCGTTCTTCGATTTCTTTTATCAATCACAAGGAAACCAAAATCTTTAAAACTTTTGATGATGTCCCTGCGATAGTTAGTTTTGCAAAATTTCAGTCATCGTTCCGTCTCCGAGTGAAAAATTCCATGCAAGAAGCACACCACGCACGCGACAACAGCTTCAATTCTGAGGCAAGGAGAAACGAAAAACGGGAGAAGGTGCATGCTCCTTCGGTGGCTCATAATCAGAGTGATTCGAAGAGAGTACCTGTGTATGTGATGCTGCCACTGGACACGGTGACAATGGGGGGAAGCTTGAATAAGCCTAGAGCAATGAATGCTAGTTTGATGGCCCTGAAGAGTGCAGGTGTGGAAGGGGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAGGACGGGCCTTTGAAGTACAACTGGGAACCCTATGCTGAGCTTGTGCAGATGGTACAAATGCATGGTTTGAAGCTTCAAGTCGTCATGTCTTTCCATCAGTGTGGGGGAAATGTTGGAGACACTTGCAGCATTCCTCTACCACCATGGGTGCAGGAAGAAATCAGCAAAAACCCTGACCTAGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATTTCATTGGGCTGTGATTCAGTTCCTATTCTAAGGGGAAGGACTCCCCTTCAAGTGTACGCTGACTACATGAGAAGCTTTCGTGATAGATTCCAAGATTACTTAGGCAGTGTTATCGTGGAAATACAAGTTGGCATGGGTCCATGTGGGGAACTGAGATATCCATCTTACCCAGAGACAAATGGAACTTGGAGGTTTCCCGGAATCGGAGAATTCCAGTGTTATGACAAGTATATGAAAGGGTCTTTGGCAGCAGCAGCCGAGGCCATTGGAAAGAAAGAATGGGGAGGAGGTGGCCCCCATGACTCTGGCCAGTACAATCAATTTCCTGAGGATACTGGGTTTTTCAGAAGGGAAGGAACATGGAACACTGAATATGGACGGTTCTTTCTGGAATGGTACTCCGGTAAATTGCTAGAACACGGTGAAAATATTCTCGTATCAGCCAAAGGAATATTCCATTCATCTGGGGTGAAACTATCAGGGAAAGTTGCTGGAATCCATTGGCATTACAGAGCAAGGTCACACGCAGCCGAACTAACTGCTGGCTACTACAACACGCGAAATAACGATGGGTATATGCCCATAGCCAGAATGCTGGCAAAACATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAGCAGCCAGACTTTGCTAACTGCTCACCTGAAGGATTGGTTCGGCAGGTAAAGATGGCAACAACAACAGCTAGAGCAGAACTTGCTGGAGAAAACGCATTGGAGAGATATGACGCAGATGCATATGCTCAAGTTTTATCAACAAGTAAATCTGAATCTGGCAACGGATTGGCAGCATTCACTTATCTAAGAATGAACAAGAGGTTGTTTGAAGGTGATAACTGGCGGCACCTAGTGAATTTTGTAAGAAGCATGTCTGAAGGTGGTAGGAAGGAGAGACTTCCGGCGTCTGATTCCCATGGAAGTGATCTTTATGTTGGGCACATCAAATCAACAAAGGAGAAGCACACACAAGAGGCTGTTCTTGTGTAA 1647 0.4566 MALTLRSSISFINHKETKIFKTFDDVPAIVSFAKFQSSFRLRVKNSMQEAHHARDNSFNSEARRNEKREKVHAPSVAHNQSDSKRVPVYVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEPYAELVQMVQMHGLKLQVVMSFHQCGGNVGDTCSIPLPPWVQEEISKNPDLVYTDRSGRRNPEYISLGCDSVPILRGRTPLQVYADYMRSFRDRFQDYLGSVIVEIQVGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKGSLAAAAEAIGKKEWGGGGPHDSGQYNQFPEDTGFFRREGTWNTEYGRFFLEWYSGKLLEHGENILVSAKGIFHSSGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRNNDGYMPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVRQVKMATTTARAELAGENALERYDADAYAQVLSTSKSESGNGLAAFTYLRMNKRLFEGDNWRHLVNFVRSMSEGGRKERLPASDSHGSDLYVGHIKSTKEKHTQEAVLV* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01388 548 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 46 519 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Plant beta-amylase signature 404 414 IPR001371 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Plant beta-amylase signature 486 500 IPR001371 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Plant beta-amylase signature 245 254 IPR001371 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 383 394 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 438 460 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 120 134 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 330 349 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 366 382 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 141 159 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 277 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 163 184 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 401 424 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 ProSitePatterns Beta-amylase active site 1. 167 175 IPR018238 GO:0000272|GO:0016161
Lapu3g01388 548 MobiDBLite consensus disorder prediction 50 81 - -
Lapu3g01388 548 Pfam Glycosyl hydrolase family 14 89 506 IPR001554 GO:0000272|GO:0016161
Lapu3g01388 548 Gene3D Glycosidases 78 546 - -
Lapu3g01388 548 MobiDBLite consensus disorder prediction 50 75 - -
Lapu3g01388 548 SUPERFAMILY (Trans)glycosidases 84 513 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01388 Lapu-Chr3 15523109 15525703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01388 1 548 Glycoside Hydrolase AT4G17090 70.674 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01388 K01177 - gmx:100818063 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01388 3 15523109 15525703 Lapu3g01388 3 15523109 15525703 ECH