Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01385 ATGTACAAAGAACGAGGAGGTGTTTCCGTCACTGTTTCTGCTTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGACAAGCACCTCGAACGATCCTCTCCTTCCACTTCTCGTCCCATCAACGCCACCTCCAAAAATTCCAACCTCCAAGCTGAGGAATCTGAAACGGAGAGTGAAGAGTCCGATGTTAGCGGTTCGGATGGAGATGACACCTCTTGGATCTCCTGGTTCTGCAATCTCAGGGGAAACGAGTTCTTTTGCGAGGTCGATGATGATTATATCCAGGATGACTTCAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTACGATTATGCCCTTGATTTGATTCTCGATGTCGAATCATCCCATGGTGACATGTTCACGGAGGAACAGAATGAGTTGATTGAATCAGCAGCGGAAATGCTTTATGGTTTGATTCATGCCAGATATGTGTTGACCAGCAAAGGAATGGCTGCCATGCTTGACAAATACAAGAACTATGATTTTGGTAGATGCCCAAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGTCAATCAGACATTCCTAGGGCAAGTACTGTAAAAATATACTGCCCTAGGTGTGAAGATCTTTACTATCCTCGCTCCAAGTACCAAGGCATCTGTCTAGACATTGATGGAGCTTATTTTGGAACAACATTTCCGCACCTCTTCTTGATGACATATGGACAACTAAAACCACAGAAACCATCACAAGGCTATGTTCCAAGAGTTTTTGGGTTCAAAGTTCACAAACCATAA 795 0.4528 MYKERGGVSVTVSASKSEDRKRINDVLDKHLERSSPSTSRPINATSKNSNLQAEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRASTVKIYCPRCEDLYYPRSKYQGICLDIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKVHKP* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01385 264 MobiDBLite consensus disorder prediction 15 35 - -
Lapu3g01385 264 SMART CK_II_beta_2 74 260 IPR000704 GO:0005956|GO:0019887
Lapu3g01385 264 ProSitePatterns Casein kinase II regulatory subunit signature. 175 206 IPR000704 GO:0005956|GO:0019887
Lapu3g01385 264 SUPERFAMILY Casein kinase II beta subunit 72 263 IPR035991 GO:0005956|GO:0019887
Lapu3g01385 264 PRINTS Casein kinase II regulatory subunit family signature 193 214 IPR000704 GO:0005956|GO:0019887
Lapu3g01385 264 PRINTS Casein kinase II regulatory subunit family signature 74 90 IPR000704 GO:0005956|GO:0019887
Lapu3g01385 264 PRINTS Casein kinase II regulatory subunit family signature 91 105 IPR000704 GO:0005956|GO:0019887
Lapu3g01385 264 PRINTS Casein kinase II regulatory subunit family signature 146 167 IPR000704 GO:0005956|GO:0019887
Lapu3g01385 264 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956|GO:0019887
Lapu3g01385 264 PANTHER CASEIN KINASE II SUBUNIT BETA 53 263 IPR000704 GO:0005956|GO:0019887
Lapu3g01385 264 Pfam Casein kinase II regulatory subunit 74 260 IPR000704 GO:0005956|GO:0019887
Lapu3g01385 264 FunFam Casein kinase II subunit beta 67 171 - -
Lapu3g01385 264 Gene3D - 172 249 - -
Lapu3g01385 264 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 67 171 IPR016149 GO:0005956|GO:0019887
Lapu3g01385 264 MobiDBLite consensus disorder prediction 1 70 - -
Lapu3g01385 264 MobiDBLite consensus disorder prediction 36 53 - -
Lapu3g01385 264 FunFam Casein kinase II subunit beta 172 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01385 Lapu-Chr3 15489283 15492391 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01385 K03115 - gmx:100793573 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01385 3 15489283 15492391 Lapu3g01385 3 15489283 15492391 ECH
Lapu2g00412 2 3358005 3361651 Lapu3g01385 3 15489283 15492391 PCT