Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01228 ATGGCATTGGCAACAATGGGAGAGAGTCCTCGGAGCCCAGAAGCGAAATTGGGTATGCGAGTTGGAGATCTTTGGGACATTCAAGAGGCACAACTAAGTCCTACTGAGAAGCTCAATGCTTGTTTTGAAAGCATTCCTGTCTCTGCGTTTCCTTTGACTCCTTCAAACCAAGAAATTGAAATCAAATCAGACGCCACCCTGGCTGAAGCTGTTATGAAACTGGCACAACACAATGTTTTCAGTGCACCTGTGGTGGATGTTGATGCACCTGAAGATGCTAGTTGGATTGACAGATACATTGGAATTATAGAGTTTGCTGGAATTGTTGTATGGATTTTGCATCAGTCTGAACCTGCATCTCCTAGGAGTCCATCTACTCCATCTAGTGCCAAGGCTATTGCAGCTGCAGCTAATGGAGTGAGTTTCGCTCTAGAACTTGAAGCCTTAGGCCTTGGATCAGCTACAACAACTTCAGGGAACTTTTTTGAGGATCTCACTTCTTCTGAACTTTATAAGAATACTAAGGTTCGTGACATTTCAGGAACATTTCGTTGGGCCCCATTTCTTGCTCTAGAGAGATCAAACTCATTTCTAACCATGCTCTTGCTGCTTTCTAAGTACAAGATGAAGAGTGTTCCTGTGTTGGATTTAGGCTCTGGTACAATTGATAAGATTATTACACAATCTGCTGTGATTCATATGCTGGCAGAATGCGCTGGACTTCAGTGGTTTGAAAGTTGGGGAACCAAGAAGATATCTGAAGTTGGTCTTCCCCTAGTTACACCAGATCAGATCATAAAGATTTATGAGAATGAACCAGTCCTTCAAGCATTTAAAATAATGAGAAAAAAGAGGGTTGGAGCGGTACCTGTAATTGAGAAAGATAGCGAAAAGGCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTCTTGCTAACTGCACCAGAAATCTATCATGATTATAGAGCTATTACAGTAAAGGACTTCCTGACTGCCGTTAGAAGTTACTTGGAGAAGAATAAAAACACATTCCCAATGGTAAGTGAATATATTACATGCAAAGAGGAGTGTACAATCAAAGAGTTGATTCAACTACTTGATCAAGAGAAGATTCATAGGGTGTATGTGGTGGACGATAATGGAAATCTGCAAGGACTAATCACACTAAGAGACATCATCTCAAGACTAGTACACGAACCCCGTGGCTATTTTGGTGATTTCTTTGATGGTGTTCTACCTCTGCCTGCAAATACCAGAGTTTAA 1263 0.4125 MALATMGESPRSPEAKLGMRVGDLWDIQEAQLSPTEKLNACFESIPVSAFPLTPSNQEIEIKSDATLAEAVMKLAQHNVFSAPVVDVDAPEDASWIDRYIGIIEFAGIVVWILHQSEPASPRSPSTPSSAKAIAAAANGVSFALELEALGLGSATTTSGNFFEDLTSSELYKNTKVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVLDLGSGTIDKIITQSAVIHMLAECAGLQWFESWGTKKISEVGLPLVTPDQIIKIYENEPVLQAFKIMRKKRVGAVPVIEKDSEKAVGNISLRDVQFLLTAPEIYHDYRAITVKDFLTAVRSYLEKNKNTFPMVSEYITCKEECTIKELIQLLDQEKIHRVYVVDDNGNLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANTRV* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01228 420 ProSiteProfiles CBS domain profile. 346 404 IPR000644 -
Lapu3g01228 420 SUPERFAMILY CBS-domain pair 249 406 IPR046342 -
Lapu3g01228 420 CDD CBS_pair_SF 263 393 - -
Lapu3g01228 420 SUPERFAMILY CBS-domain pair 30 236 IPR046342 -
Lapu3g01228 420 CDD CBS_pair_SF 201 308 - -
Lapu3g01228 420 Gene3D - 35 240 IPR046342 -
Lapu3g01228 420 ProSiteProfiles CBS domain profile. 52 120 IPR000644 -
Lapu3g01228 420 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 48 396 - -
Lapu3g01228 420 Gene3D - 249 399 IPR046342 -
Lapu3g01228 420 ProSiteProfiles CBS domain profile. 260 321 IPR000644 -
Lapu3g01228 420 SMART cbs_1 264 313 IPR000644 -
Lapu3g01228 420 SMART cbs_1 57 113 IPR000644 -
Lapu3g01228 420 SMART cbs_1 349 397 IPR000644 -
Lapu3g01228 420 Pfam CBS domain 346 397 IPR000644 -
Lapu3g01228 420 Pfam CBS domain 264 308 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01228 Lapu-Chr3 13204244 13207357 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01228 - - gmx:100812388 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01228 3 13204244 13207357 Lapu3g01228 3 13204244 13207357 ECH