Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01212 ATGGCCTTTGGAACCTATGGCTCTTACTATGATGTGCCAGAGGGAGTGGATATTCGAGGAAGATATGATGCAGAGTTTGCAAAAATCTTAACAAAAGATGCTTTGAAATTCGTTGCTGACCTTCAACGTGAGTTCAGGAACCATATCAAGTATGCATTAGAGAGGAGAAGAGAGGCAAAGAGGAGGTACAATGAAGGGGCTCTTCCGGGGTTTGATCCTGCCACCAGGTACATAAGAGAGCAAGAGTGGGTGTGTGCACCTGTTCCACCATCTGCTGCTGATAGGAAAGTGGAAATCACTGGTCCTGTGGAAAGAAAGATGATCATCAATGCTCTCAACTCTGGTGCTAAAGTTTTCATGGCTGATTTTGAAGATGCACTGTCACCCAGCTGGGAAAATCTTATGAGAGGCCAAGTGAACTTGAAGGATGCGGTGGATGGCACCATAAGCTTCCATGACAAAGTAAGAAACAGGGTTTACAAGCTCAATGATCAAACAGCGAAGCTTTTTGTGCGACCAAGAGGTTGGCACCTACCCGAGGCACATATACTCATCGATGGTGAACCTGCAACTGGTTGCCTTGTTGATTTTGGCCTCTTTTTCTACCACAATCACTCAGAATTTCGGCGCACTCAAGGTGCTGGCTTTGGCCCCTTCTTTTATCTTCCCAAAATGGAGCATTCAAGGGAAGCTAAGATATGGAACAACGTGTTTGAGAAGGCTGAGAAGGTAGCAGGCATCGAAAGTGGAAGCATAAGGGCGACGGTTCTGATAGAAACACTTCCTGCAGTGTTTCAAATGAACGAAATTCTGTATGAGCTGAAGGAGCACTCGGTGGGTCTGAACTGTGGGCGTTGGGATTACATTTTCAGTTATGTGAAGACCTTCCAGGCTCACCCAGATCGCCTCCTACCAGACAGAGTGCAGGTTGGCATGACACAACACTTCATGAAGAGCTACTCTGATCTCCTCATCAGGACGTGTCACAGGCGAGGTGTGCATGCTATGGGAGGAATGGCGGCGCAGATTCCAATCAAAGAGGATCCAGTGGCTAATGAGTTAGCACTGGAACTTGTAAGGAAGGACAAACTTAGAGAAGTGAAGGCAGGGCACGATGGGACTTGGGCTGCACACCCTGGTCTCATTCCAGCTTGCATGCAGATTTTCAACAACAACATGGGCAATGCTCCTAACCAGATAGAGACAAACCAACGTGAAGATGCTGCAAACATAAGTGAGCAAGATCTGTTGCAGATACCAAGAGGAGTCCGAACTATGGAAGGTCTCAGATTGAACACAAGGGTGGGGATTCAGTACGTGGCAGCATGGCTCACTGGAAGCGGTTCTGTGCCTCTTTACAACCTGATGGAAGATGCCGCCACTGCTGAGATTAGCAGGGTGCAGAACTGGCAGTGGCTCAAGTATGGAGTGGAACTGAATGGGGATGAAGTTGGAGTGAAAGTGAACAGAGAACTTTTTGGTAGGGTGGTTGAAGAAGAGATGGCAAGGATTGAAAAGGAAGTGGGGACAGAGAAGTTCAAGAAGGGAATGTACAAGGAGGCTTGCAAGATCTTCACTCGTCAATGCACCTCCCCAACACTTGATGATTTTCTAACCCTGGATGCCTATAATTACGTTATCATGTATCATCCTAAGGAATCATCAAAACTTTGA 1674 0.4695 MAFGTYGSYYDVPEGVDIRGRYDAEFAKILTKDALKFVADLQREFRNHIKYALERRREAKRRYNEGALPGFDPATRYIREQEWVCAPVPPSAADRKVEITGPVERKMIINALNSGAKVFMADFEDALSPSWENLMRGQVNLKDAVDGTISFHDKVRNRVYKLNDQTAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLFFYHNHSEFRRTQGAGFGPFFYLPKMEHSREAKIWNNVFEKAEKVAGIESGSIRATVLIETLPAVFQMNEILYELKEHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVQVGMTQHFMKSYSDLLIRTCHRRGVHAMGGMAAQIPIKEDPVANELALELVRKDKLREVKAGHDGTWAAHPGLIPACMQIFNNNMGNAPNQIETNQREDAANISEQDLLQIPRGVRTMEGLRLNTRVGIQYVAAWLTGSGSVPLYNLMEDAATAEISRVQNWQWLKYGVELNGDEVGVKVNRELFGRVVEEEMARIEKEVGTEKFKKGMYKEACKIFTRQCTSPTLDDFLTLDAYNYVIMYHPKESSKL* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01212 557 PANTHER MALATE SYNTHASE 10 553 IPR006252 GO:0004474|GO:0006097
Lapu3g01212 557 FunFam Malate synthase 12 422 - -
Lapu3g01212 557 ProSitePatterns Malate synthase signature. 275 290 IPR019830 GO:0004474|GO:0006097
Lapu3g01212 557 CDD malate_synt_A 29 546 IPR006252 GO:0004474|GO:0006097
Lapu3g01212 557 NCBIfam malate synthase A 29 546 IPR006252 GO:0004474|GO:0006097
Lapu3g01212 557 FunFam Malate synthase 423 547 - -
Lapu3g01212 557 SUPERFAMILY Malate synthase G 7 547 IPR011076 GO:0003824
Lapu3g01212 557 PIRSF Malate_synth 8 548 IPR006252 GO:0004474|GO:0006097
Lapu3g01212 557 Gene3D Malate synthase, domain 3 12 422 IPR046363 -
Lapu3g01212 557 Pfam Malate synthase 17 547 IPR001465 GO:0004474|GO:0006097
Lapu3g01212 557 Gene3D Malate synthase, domain III 423 547 IPR044856 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01212 Lapu-Chr3 13049642 13051992 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01212 K01638 - gmx:732628 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01212 3 13049642 13051992 Lapu3g01212 3 13049642 13051992 ECH