Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu3g01187 | ATGGCGAAAACATGCAAGTCGCAAGAAGAAATTGCGTGTGAAGCTATTAAGCATGCTTTGAAGGCACTGCGGAAGCGCCATTTGCTTGAAGAAGCCGCTCATGGTCCCGCTCTTCTGGCTCTTTCTAGACCCATCGTTTCTCAGACAACTGGAATGCTTCTATTGAGGTTAATGTTATATCTATGTTTGTCCTTCAAGGGCTCTGAGTGGAAAGACAAAGCAGAGAATCTTCAAGTGGAACTTCAGCAATGCTACAAAGCTCAATCTCGGCTCTCTGAGCAACTTGTTTTGGAAGTAGCTGAGTCCAGAGCTTCAAAAGCGTTGGTTCAAGAGAAAGAAAATGCAGTTGCTGATTTGCAAAAGGAAGTGACCGAATTGAGGGATGAGTGCTCTCAATTAAAGGAAGACTTGGAAGAAAAGATTAAATCTCTAGAAGTGATTGTCAGTGAGAATTCTGAACTTAAAGCCCAACTGCAGCAGATGACTACTAAAGCCAATAAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTGGATGTTGGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCCAACGCACTGTACGAAGACATGGTCGAGAAACTAAAGGCCAGTGGCTTAGAGCAACTTGCAAGGCAGCAGGTGGATGGTATAGTTCGCCAAAGTGAAGAAGGTGCTGAATTTTTTTCAGAGTCAAACATCCCTTCCACATGTAAATATAGGCTTCGTGCACATGAAGGTGGTTGTGCTTCCATGTTGTTTGAGTACAATTCCAGTAAATTGATTACTGGGGGACAGGATCGGTTAGTTAAAATGTGGGATACAAATACAGGATCCTTATCTTCTACTCTTCATGGCTGCCTTGGCTCAGTCTTAGATCTCACGATCACCCATGATAATCGATCTGTCATTGCTGCCAGCAGTTCAAACAACTTGTATGTATGGGATGTCAACTCAGGCCGTGTCCGTCATACCCTTACTGGCCACACAGATAAAGTTTGTGCTGTTGATGTGAGCAAGATTTCAAGTCGTCATGTTGTGAGTGCTGCTTATGATCGTACCATCAAAGTTTGGGACCTAGTGAAAGGTTATTGCACTAACACAATCATTTTTCACAGCAACTGCAATGCTCTCTCCTTCAGCATGGATGGTCAGACCATATTTTCAGGACATGTTGATGGTAATCTTCGGTTATGGGACATTCAGAGCGGAAAGCTACTCAGCGAGGTTGCTGCACATTCACTTGCGGTCACATCAATATCCCTTTCTCGAAATGGAAATGTTGTACTGACCAGTGGAAGGGACAATTTGCACAATTTGTTTGACATGCGATCTCTTGAAGTGTGTGGCACACTAAAAGCGGCGGGAAACAAAGTTGCTTCTAACTGGAGTCGCTCCTGTATTAGTCCAGATGACAATCACGTTGCTGCTGGGTCTGCCGATGGCTCTGTCTATATTTGGTCAATATCTAAAGGTGATATAGTCGGTACTCTCAAGGAACACACTTCTTCTGTTCTATGTTGTACCTGGAGTGGGATTGGAAAACCCCTAGCTTCAGCTGACAAGAATGGGATAGTTTGTGTCTGGACATAA | 1599 | 0.4378 | MAKTCKSQEEIACEAIKHALKALRKRHLLEEAAHGPALLALSRPIVSQTTGMLLLRLMLYLCLSFKGSEWKDKAENLQVELQQCYKAQSRLSEQLVLEVAESRASKALVQEKENAVADLQKEVTELRDECSQLKEDLEEKIKSLEVIVSENSELKAQLQQMTTKANKAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVEKLKASGLEQLARQQVDGIVRQSEEGAEFFSESNIPSTCKYRLRAHEGGCASMLFEYNSSKLITGGQDRLVKMWDTNTGSLSSTLHGCLGSVLDLTITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTIKVWDLVKGYCTNTIIFHSNCNALSFSMDGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNLHNLFDMRSLEVCGTLKAAGNKVASNWSRSCISPDDNHVAAGSADGSVYIWSISKGDIVGTLKEHTSSVLCCTWSGIGKPLASADKNGIVCVWT* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu3g01187 | 532 | Gene3D | - | 467 | 532 | IPR015943 | GO:0005515 | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 328 | 370 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 263 | 277 | IPR019775 | - | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 244 | 281 | - | - | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 500 | 532 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | Coils | Coil | 102 | 178 | - | - | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 244 | 285 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 379 | 411 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | FunFam | Autophagy-related protein 16 isoform A | 375 | 532 | - | - | |
| Lapu3g01187 | 532 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 348 | 362 | IPR019775 | - | |
| Lapu3g01187 | 532 | SMART | WD40_4 | 364 | 402 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | SMART | WD40_4 | 237 | 276 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | SMART | WD40_4 | 321 | 361 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | SMART | WD40_4 | 493 | 532 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | SMART | WD40_4 | 447 | 490 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | SMART | WD40_4 | 279 | 318 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | SMART | WD40_4 | 405 | 444 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | Pfam | Autophagy protein 16 (ATG16) | 71 | 191 | IPR013923 | - | |
| Lapu3g01187 | 532 | PANTHER | AUTOPHAGY PROTEIN 16-LIKE | 9 | 503 | IPR045160 | GO:0000045 | |
| Lapu3g01187 | 532 | FunFam | Autophagy-related protein 16 isoform A | 232 | 374 | - | - | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 286 | 327 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 412 | 447 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 471 | 499 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | FunFam | Autophagy-related protein 16 isoform A | 107 | 180 | - | - | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 500 | 532 | - | - | |
| Lapu3g01187 | 532 | Coils | Coil | 187 | 207 | - | - | |
| Lapu3g01187 | 532 | Gene3D | - | 107 | 180 | - | - | |
| Lapu3g01187 | 532 | Gene3D | - | 228 | 466 | IPR015943 | GO:0005515 | |
| Lapu3g01187 | 532 | Pfam | WD domain, G-beta repeat | 324 | 361 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | Pfam | WD domain, G-beta repeat | 469 | 490 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | Pfam | WD domain, G-beta repeat | 240 | 276 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | Pfam | WD domain, G-beta repeat | 495 | 531 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | Pfam | WD domain, G-beta repeat | 367 | 402 | IPR001680 | GO:0005515 | |
| Lapu3g01187 | 532 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 389 | 403 | IPR019775 | - | |
| Lapu3g01187 | 532 | CDD | WD40 | 240 | 531 | - | - | |
| Lapu3g01187 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 328 | 362 | - | - | |
| Lapu3g01187 | 532 | SUPERFAMILY | WD40 repeat-like | 236 | 531 | IPR036322 | GO:0005515 | |
| Lapu3g01187 | 532 | CDD | Atg16_CCD | 106 | 194 | - | - | |
| Lapu3g01187 | 532 | PRINTS | G protein beta WD-40 repeat signature | 389 | 403 | IPR020472 | - | |
| Lapu3g01187 | 532 | PRINTS | G protein beta WD-40 repeat signature | 348 | 362 | IPR020472 | - | |
| Lapu3g01187 | 532 | PRINTS | G protein beta WD-40 repeat signature | 263 | 277 | IPR020472 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu3g01187 | 328 | 531 | Miscellaneous Gene Families | AT5G08390 | 20.000 | 9.15e-07 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu3g01187 | K17890 | - | gmx:100778336 | 952.97 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lapu3g01187 | 3 | 12786736 | 12790281 | Lapu3g01187 | 3 | 12786736 | 12790281 | ECH |